View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6641_low_82 (Length: 293)

Name: NF6641_low_82
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6641_low_82
NF6641_low_82
[»] chr7 (1 HSPs)
chr7 (1-293)||(18515788-18516080)


Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 18516080 - 18515788
Alignment:
Q  1 taacttatggttatatcataagctatttcccaaagatctgttaaacagttctacaagtaataatataaaagtgatcataagttgtttctctcatctgctg 100  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||    
T  18516080 taacttatgggcatatcataagctatttcccaaagatctgttaaacagttctacaagtaataagctaaaagtgatcataagctgtttctctcatctgctg 18515981  T
Q  101 cgtgtttcaaatgatgtatcaaattaacaagttattttcatgcattttttcaggaatttgttaataacttttagggttacactttcttgaagttgaacta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  18515980 cgtgtttcaaatgatgtatcaaattaacaagttattttcatgcattttttcaggaatttgttaataacttttagggttacactttcttgaagttgaactg 18515881  T
Q  201 ctgtggtgctgttcgttgtgatgaatatccgtcctcatcctccgcccagtgctgcggatccatcggcagcggtaatcttcctccctgatgatg 293  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  18515880 ctgtggtgctgttcgttgtgatgaatatccttcctcatcctccgcccagtgctgcggatccatcggcagtggtaatcttcctccccgatgatg 18515788  T

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