View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_low_86 (Length: 286)
Name: NF6641_low_86
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_86 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 42313097 - 42313375
Alignment:
| Q |
1 |
ggttgacctcaggtgaccaacatgcatttcttttgctatattaggcgaggaaaagtcaaccagaatcctcttgacaggaagtcgaggagcccatgaatga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42313097 |
ggttgacctcaggtgaccaacatgcatttcttttgctatattaggcgaggaaaagtcaaccagaatcctcttgacaggaagtcgaggagcccatgaatga |
42313196 |
T |
|
| Q |
101 |
ataccacaagtgagcatcttctgtaagctctgcaagagatcaaagacatttcatgttaagagcataatccaattccaaacaacacatgctacaattcaga |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42313197 |
ataccagaagtgagcatcttctgtaagctctgcaagagatcaaagacatttcatgttaagagcataatccaattccaaacaacacatgctacaattcaga |
42313296 |
T |
|
| Q |
201 |
tagtggcctagaaatttggagacatgtataaattttaatttaaaactaagaatggaaatacaatcaatcacctatgcta |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
42313297 |
tagtggcctagaaatttggagacatgtataaattttaatttaaaactacgaatggaaatacaatcaatcacctgtgcta |
42313375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 47977713 - 47977846
Alignment:
| Q |
1 |
ggttgacctcaggtgaccaacatgcatttcttttgctatattaggcgaggaaaagtcaaccagaatcctcttgacaggaagtcgaggagcccatgaatga |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||| || |||||||| ||||||||||| |||||||||| | |
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| T |
47977713 |
ggttgacctcaggtgaccaacatgcatttctttggctatattcggtgaggaaaagtcaaccataaccctcttgattggaagtcgaggtgcccatgaatca |
47977812 |
T |
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| Q |
101 |
ataccacaagtgagcatcttctgtaagctctgca |
134 |
Q |
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| T |
47977813 |
ataccatcggtaagcatcttctgtaagctctgca |
47977846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 51565139 - 51565006
Alignment:
| Q |
1 |
ggttgacctcaggtgaccaacatgcatttcttttgctatattaggcgaggaaaagtcaaccagaatcctcttgacaggaagtcgaggagcccatgaatga |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||| || |||||||| ||||||||||| |||||||||| | |
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| T |
51565139 |
ggttgacctgaggtgaccaacatgcatttcttttgctatattgggtgaggaaaagtcaaccataaccctcttgattggaagtcgaggtgcccatgaatca |
51565040 |
T |
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| Q |
101 |
ataccacaagtgagcatcttctgtaagctctgca |
134 |
Q |
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|||||| || |||||| ||||||||||||||| |
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| T |
51565039 |
ataccatcggtaagcatcctctgtaagctctgca |
51565006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 34028927 - 34028832
Alignment:
| Q |
11 |
aggtgaccaacatgcatttcttttgctatattaggcgaggaaaagtcaaccagaatcctcttgacaggaagtcgaggagcccatgaatgaatacca |
106 |
Q |
| |
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|||||||||||||||||||| |||||||||||||| |||||||| ||||||| | |||| ||| ||||||||||| ||||| | || ||||||| |
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| T |
34028927 |
aggtgaccaacatgcatttcctttgctatattaggagaggaaaaatcaaccatagccctcctgattggaagtcgaggtgcccaggtatcaatacca |
34028832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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