View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_low_88 (Length: 273)
Name: NF6641_low_88
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_88 |
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| [»] chr3 (12 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-153; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-153
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 50814492 - 50814764
Alignment:
| Q |
1 |
ctttcacatgtcctgagtacttgatgaaacttctatctagttgtcccattctagagaagttggaagcaaatgattcaataactacgactttctttaaggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50814492 |
ctttcacatgtcctgagtacttgatgaaacttctatctagttgtcccattctagagaagttggaagcaaatgattcaataactacgactttctttaaggt |
50814591 |
T |
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| Q |
101 |
gattggtagagatagaggagagtttataaagtgccgttactccgaaaccatactgccttctttcatcctaactaccaaaaccctgacccaactcaaattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50814592 |
gattggtagagatagaggagagtttataaagtgccgttactccgaaaccatactgccttctttcatcctaactaccaaaaccctgacccaactcaaattg |
50814691 |
T |
|
| Q |
201 |
aagaggataacattgaaccaagttcctttcgttgatcttcccttgctaaaagtccttcacttagaatctgtca |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50814692 |
aagaggataacattgaaccaagttcctttcgttgatcttcccttgctaaaagtccttcacttagaatctgtca |
50814764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 273; E-Value: 1e-153
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 50861372 - 50861100
Alignment:
| Q |
1 |
ctttcacatgtcctgagtacttgatgaaacttctatctagttgtcccattctagagaagttggaagcaaatgattcaataactacgactttctttaaggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50861372 |
ctttcacatgtcctgagtacttgatgaaacttctatctagttgtcccattctagagaagttggaagcaaatgattcaataactacgactttctttaaggt |
50861273 |
T |
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| Q |
101 |
gattggtagagatagaggagagtttataaagtgccgttactccgaaaccatactgccttctttcatcctaactaccaaaaccctgacccaactcaaattg |
200 |
Q |
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| T |
50861272 |
gattggtagagatagaggagagtttataaagtgccgttactccgaaaccatactgccttctttcatcctaactaccaaaaccctgacccaactcaaattg |
50861173 |
T |
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| Q |
201 |
aagaggataacattgaaccaagttcctttcgttgatcttcccttgctaaaagtccttcacttagaatctgtca |
273 |
Q |
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| T |
50861172 |
aagaggataacattgaaccaagttcctttcgttgatcttcccttgctaaaagtccttcacttagaatctgtca |
50861100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 143 - 273
Target Start/End: Original strand, 50814361 - 50814491
Alignment:
| Q |
143 |
cgaaaccatactgccttctttcatcctaactaccaaaaccctgacccaactcaaattgaagaggataacattgaaccaagttcctttcgttgatcttccc |
242 |
Q |
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|||||||| ||||||||||||||| ||||||| ||||||| |||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
50814361 |
cgaaaccacactgccttctttcattctaactagcaaaaccttgacatccctcaaattgaagagggtaacattgaacgaagttcctttcgttgatcttccc |
50814460 |
T |
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| Q |
243 |
ttgctaaaagtccttcacttagaatctgtca |
273 |
Q |
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| T |
50814461 |
tcactaaaagtccttcacttagaatctgtca |
50814491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 143 - 273
Target Start/End: Complemental strand, 50861503 - 50861373
Alignment:
| Q |
143 |
cgaaaccatactgccttctttcatcctaactaccaaaaccctgacccaactcaaattgaagaggataacattgaaccaagttcctttcgttgatcttccc |
242 |
Q |
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|||||||| ||||||||||||||| ||||||| ||||||| |||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
50861503 |
cgaaaccacactgccttctttcattctaactagcaaaaccttgacatccctcaaattgaagagggtaacattgaacgaagttcctttcgttgatcttccc |
50861404 |
T |
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| Q |
243 |
ttgctaaaagtccttcacttagaatctgtca |
273 |
Q |
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| T |
50861403 |
tcactaaaagtccttcacttagaatctgtca |
50861373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 139 - 272
Target Start/End: Original strand, 39558757 - 39558890
Alignment:
| Q |
139 |
actccgaaaccatactgccttctttcatcctaactaccaaaaccctgacccaactcaaattgaagaggataacattgaaccaagttcctttcgttgatct |
238 |
Q |
| |
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||||||| | |||||||||| |||| | ||||||||||||||| |||| |||||||||||||| ||||||||||| |||||||||||||| |||| |
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| T |
39558757 |
actccgatatcatactgcctgctttggttctaactaccaaaaccttgacagtcctcaaattgaagagtgtaacattgaacgaagttcctttcgttaatct |
39558856 |
T |
|
| Q |
239 |
tcccttgctaaaagtccttcacttagaatctgtc |
272 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
39558857 |
tcccttgctaaaagtccttcacttagaatctgtc |
39558890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 145 - 273
Target Start/End: Original strand, 39559024 - 39559155
Alignment:
| Q |
145 |
aaaccatactgccttctttcatcctaactaccaaaaccctgacccaactcaaattgaagaggataacattga---accaagttcctttcgttgatcttcc |
241 |
Q |
| |
|
|||||| | |||||||||| | ||||||| ||||||| ||||| ||||||||||||||| ||||||||| | ||||||||||||| |||||||| |
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| T |
39559024 |
aaaccacattgccttctttagttctaactaacaaaaccttgaccgtcctcaaattgaagagggtaacattgaatgaagaagttcctttcgtcgatcttcc |
39559123 |
T |
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| Q |
242 |
cttgctaaaagtccttcacttagaatctgtca |
273 |
Q |
| |
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|| ||||||||| ||||||||| ||||||||| |
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| T |
39559124 |
ctcgctaaaagtgcttcacttaaaatctgtca |
39559155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 39558905 - 39558966
Alignment:
| Q |
14 |
tgagtacttgatgaaacttctatctagttgtcccattctagagaagttggaagcaaatgatt |
75 |
Q |
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||||||| | |||||||||||||| | ||||||||||||||| ||||||||||||| |||| |
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| T |
39558905 |
tgagtacatcatgaaacttctatccggctgtcccattctagaggagttggaagcaaaggatt |
39558966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 39559180 - 39559225
Alignment:
| Q |
25 |
tgaaacttctatctagttgtcccattctagagaagttggaagcaaa |
70 |
Q |
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| T |
39559180 |
tgaaacttctatctgtttgtcccattctagaggagttggaagcaaa |
39559225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 268
Target Start/End: Complemental strand, 49857588 - 49857509
Alignment:
| Q |
192 |
ctcaaattgaagaggataacattgaac---caagttcctttcgttgatcttcccttgctaaaagtccttcacttagaatc |
268 |
Q |
| |
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||||||||||||||||||||||||||| ||| |||||| ||||||||||| | ||| ||| |||||||||| ||||| |
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| T |
49857588 |
ctcaaattgaagaggataacattgaactatgaaggtcctttggttgatcttccgtcgctcaaaatccttcacttggaatc |
49857509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 262
Target Start/End: Complemental strand, 49760735 - 49760665
Alignment:
| Q |
192 |
ctcaaattgaagaggataacattgaaccaagttcctttcgttgatcttcccttgctaaaagtccttcactt |
262 |
Q |
| |
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||||||||||||||||||||||||| |||||| | |||||||||||| | ||| |||| ||||||||| |
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| T |
49760735 |
ctcaaattgaagaggataacattgactggagttccgtacgttgatcttccttcgctcaaagcccttcactt |
49760665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 50814793 - 50814834
Alignment:
| Q |
29 |
acttctatctagttgtcccattctagagaagttggaagcaaa |
70 |
Q |
| |
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|||||||||| |||||||| |||||||| ||||||||||||| |
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| T |
50814793 |
acttctatctggttgtcccgttctagaggagttggaagcaaa |
50814834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 50861071 - 50861030
Alignment:
| Q |
29 |
acttctatctagttgtcccattctagagaagttggaagcaaa |
70 |
Q |
| |
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|||||||||| |||||||| |||||||| ||||||||||||| |
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| T |
50861071 |
acttctatctggttgtcccgttctagaggagttggaagcaaa |
50861030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 269
Target Start/End: Complemental strand, 19371002 - 19370925
Alignment:
| Q |
192 |
ctcaaattgaagaggataacattgaaccaagttcctttcgttgatcttcccttgctaaaagtccttcacttagaatct |
269 |
Q |
| |
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||||||||||||||||||||| | ||||||||| | |||||||||||||| ||| ||||| |||||| | |||||| |
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| T |
19371002 |
ctcaaattgaagaggataacaatcaaccaagtttcaaacgttgatcttccctcgctcaaagtacttcacatggaatct |
19370925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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