View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_low_90 (Length: 271)
Name: NF6641_low_90
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_90 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 42041680 - 42041437
Alignment:
| Q |
18 |
gatgcatcattcggaacaatacaagcttgcagctccgccaattcatcggagcctcttcgaacccgaatcattatcgaagtttccttcttcttataagctt |
117 |
Q |
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| T |
42041680 |
gatgcatcattcggaactatacaagcttgcagctccgccaattcatcggagcctcttcgaacccgaatcattatcgaagtttccttcttcttataagctt |
42041581 |
T |
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| Q |
118 |
cttgaagaattttctgaactccacttcttccacctttgaaaggtgaattatatcggatctgtgattttgtttttgttccgattcgaagctcttcgactat |
217 |
Q |
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| T |
42041580 |
cttgaagaattttctgaactccacttcttccacctttgaaaggtgaattatatcggatctgtgattttgtttttgttccgattcgaagctcttcgactat |
42041481 |
T |
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| Q |
218 |
gtcgccggtttgaagcatgtctactgtccattcatctgcctttg |
261 |
Q |
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| T |
42041480 |
gtcgccggtttgaagcatgtctactgtccattcatctgcttttg |
42041437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 51725880 - 51726060
Alignment:
| Q |
20 |
tgcatcattcggaacaatacaagcttgcagctccgccaattcatcggagcctcttcgaacccgaatcattatcgaagtttccttcttcttataagcttct |
119 |
Q |
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|||||||||| ||||| ||||||||||||||||||||||||||||||| |||| || ||| | ||||||||||||||||| |||||||||| | | |||| |
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| T |
51725880 |
tgcatcattcagaacagtacaagcttgcagctccgccaattcatcggatcctcgtcaaactcaaatcattatcgaagttttcttcttcttacacgtttct |
51725979 |
T |
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| Q |
120 |
tgaagaattttctgaactccacttcttccacctttgaaaggtgaattatatcggatctgtgattttgtttttgttccgatt |
200 |
Q |
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| T |
51725980 |
tgaagaattttctgaacgccactttttccacctttgaaaggtgaattgcattggatctgtgattttgtttttgtttcgatt |
51726060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 24848985 - 24849034
Alignment:
| Q |
201 |
cgaagctcttcgactatgtcgccggtttgaagcatgtctactgtccattc |
250 |
Q |
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| T |
24848985 |
cgaagttcttcgactatgtcaccggtttgaagcatgtctccggtccattc |
24849034 |
T |
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