View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6641_low_91 (Length: 270)
Name: NF6641_low_91
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_91 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 4884553 - 4884739
Alignment:
| Q |
15 |
catcaacctcttacaagtatgtgatctataagctta----gtgtcaactttcaagatgatttcttccttctagttcaagtcttcaacttaacaaaatcaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4884553 |
catcaacctcttacaagtatgtgatctataagcttaattagtgtcaactttcaagatgatttcttccttctagttcaagtcttcaacttaacaaaatcaa |
4884652 |
T |
|
| Q |
111 |
aaccatatataacattttatcatagcactaaaattttaaccatatgtacacaaaattgacagaaacaaagtttattttcttctttac |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4884653 |
aaccatatataacattttatcatagcactaaaattttaaccatatgtacacaaaattgacagaaacaaagtttattttcttctttac |
4884739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University