View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6642_low_1 (Length: 377)
Name: NF6642_low_1
Description: NF6642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6642_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 8 - 362
Target Start/End: Original strand, 36451580 - 36451934
Alignment:
| Q |
8 |
aaggtgcagcagaatcatgaaggtagccgtgatcctcaaaggtacgggcccattgttgatcgcggtcgccatacaccacagcctagtgctgatggacgta |
107 |
Q |
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| T |
36451580 |
aaggtgcagcagaatcatgaaggtagccatgatcctcaaaggtacgggcccattgttgatcgcggtcgccatacaccacagcctagtgctgatggacgta |
36451679 |
T |
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| Q |
108 |
agccaattggaggtagcaccgttaacaaccataatgatagttatggtactaattatccatatggtggtgacagagacggacgcaagccaattggaattag |
207 |
Q |
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| T |
36451680 |
agccaattggaggtagtaccgttaacaaccataatgatagttatggtactaattatccatatggtggtgacagagacggacgcaagccaattggaattag |
36451779 |
T |
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| Q |
208 |
tccaattaagaatcgcaaatatggtggtggtcctaatggttatggtagtgctcatcgtgcaacagctataggggatccaagtccacataaagacgggcgt |
307 |
Q |
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| T |
36451780 |
tccaattaagaatcgcaaatatggtggtggtcctaatggttatggtggtgctcatcgtgcaacagctataggggatccaagtccacataaagacaggcgt |
36451879 |
T |
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| Q |
308 |
aaaccaattggaggtggcataatgagtagtgatgatggctataataatggatatg |
362 |
Q |
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| T |
36451880 |
aaaccaattggaggtggcataatgagtagtgatgatggctataataatggatatg |
36451934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 166 - 326
Target Start/End: Original strand, 36451930 - 36452087
Alignment:
| Q |
166 |
atatggtggtgacagagacggacgcaagccaattggaattagtccaattaagaatcgcaaatatggtggtggtcctaatggttatggtagtgctcatcgt |
265 |
Q |
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| T |
36451930 |
atatggtggtgacaaagatggacgcaggccgattggaattagtccagtaaagaatgataaata---tgatggtactaatggctacggcagtgatcaccgt |
36452026 |
T |
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| Q |
266 |
gcaacagctataggggatccaagtccacataaagacgggcgtaaaccaattggaggtggca |
326 |
Q |
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| T |
36452027 |
gcaacacctgttggggatccaaatccctacaaagaaggtcgtaaaccaattggaggtggca |
36452087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 170 - 320
Target Start/End: Original strand, 36452321 - 36452468
Alignment:
| Q |
170 |
ggtggtgacagagacggacgcaagccaattggaattagtccaattaagaatcgcaaatatggtggtggtcctaatggttatggtagtgctcatcgtgcaa |
269 |
Q |
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| T |
36452321 |
ggtggtgacaaagaaggacgcaagccagttggaattagtccaactgggaatagcaatta---tgatggtcctaatcggtatagtggtgaccatcgtgcaa |
36452417 |
T |
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| Q |
270 |
cagctataggggatccaagtccacataaagacgggcgtaaaccaattggag |
320 |
Q |
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| T |
36452418 |
caagtgtaggagatccaaatccctacaaagaagggcgtaaaccaatcggag |
36452468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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