View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6642_low_2 (Length: 371)
Name: NF6642_low_2
Description: NF6642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6642_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 26832429 - 26832796
Alignment:
| Q |
1 |
ctaacattctcaaaataaacaaaatctaccgacagattgattttattgttttgtagctctttatggcacaagttagcatgacccctaaaagataaacaaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| ||| |
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| T |
26832429 |
ctaacattctcaaaataaacaaaatctaccgacagtttgattttattgttttgcggctctttagggcacaagttagcatgaccc-taaaagataaataaa |
26832527 |
T |
|
| Q |
101 |
agaagttaatgtgattataagaaggagaagaaaaggaaattaccaaacttccagcgagcctgaacaagaccaatatcaggattattaacaaggaaaggga |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26832528 |
agaagttaatgtgattataagaaggagaagaaaaggaaattaccaaacttccagcgagcctgaacaagaccaatatcaggattattaacaaggaaaggga |
26832627 |
T |
|
| Q |
201 |
tggttcgccaaagaaaatcaggttctggttgaaaatcagcatcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26832628 |
tggttcgccaaagaaaatcaggttctggttgaaaatcagcatcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaa |
26832727 |
T |
|
| Q |
301 |
tgcacctgctttgtaaccatttctattgtccctaacttcatactttatattcacacctttgctactcca |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
26832728 |
tgcacctgctttgtaaccatttctattgtccctaacttcatactttatattcacacctttgcttctcca |
26832796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 138 - 361
Target Start/End: Original strand, 26785847 - 26786070
Alignment:
| Q |
138 |
aattaccaaacttccagcgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaatc |
237 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||| | || || ||||||||||| ||||||||||| |
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|
| T |
26785847 |
aattaccaaacttccagcgagcctgaacgagaccaatttcaggattattgacaaggaaaggaatggtttggcagaggaaatcaggttcaggttgaaaatc |
26785946 |
T |
|
| Q |
238 |
agcatcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaact |
337 |
Q |
| |
|
|||||||||||| |||||||| ||||||||| |||| |||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||| |
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|
| T |
26785947 |
agcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaact |
26786046 |
T |
|
| Q |
338 |
tcatactttatattcacacctttg |
361 |
Q |
| |
|
||||||||||| |||||||||||| |
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|
| T |
26786047 |
tcatactttatgttcacacctttg |
26786070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 138 - 361
Target Start/End: Original strand, 26822488 - 26822711
Alignment:
| Q |
138 |
aattaccaaacttccagcgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaatc |
237 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| |||||||| ||||| | ||||| |||||||| ||||||||||| |
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|
| T |
26822488 |
aattaccaaacttccagcgagcctgaacgagaccaatttcaggattattgacaagaaaagggatcgttcggcggagaaagtcaggttcaggttgaaaatc |
26822587 |
T |
|
| Q |
238 |
agcatcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaact |
337 |
Q |
| |
|
|||||||||||| |||||||| ||||||||| |||| |||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||| |
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|
| T |
26822588 |
agcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaact |
26822687 |
T |
|
| Q |
338 |
tcatactttatattcacacctttg |
361 |
Q |
| |
|
||||||||||| |||||||||||| |
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|
| T |
26822688 |
tcatactttatgttcacacctttg |
26822711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 141 - 361
Target Start/End: Original strand, 26791590 - 26791810
Alignment:
| Q |
141 |
taccaaacttccagcgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaatcagc |
240 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||||||||| |
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|
| T |
26791590 |
taccaaacttccagcgagcttgaacgagaccaatctcaggattattgacaagaaaagggatggttcggaggagaaaatcaggttcaggttgaaaatcagc |
26791689 |
T |
|
| Q |
241 |
atcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaacttca |
340 |
Q |
| |
|
||||||||| |||||||| ||||||||| |||| |||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||| |
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| T |
26791690 |
atcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttca |
26791789 |
T |
|
| Q |
341 |
tactttatattcacacctttg |
361 |
Q |
| |
|
|||||||| |||||||||||| |
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|
| T |
26791790 |
tactttatgttcacacctttg |
26791810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 227 - 348
Target Start/End: Complemental strand, 41546352 - 41546231
Alignment:
| Q |
227 |
ggttgaaaatcagcatcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctat |
326 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||| |||| ||||||||||| |||||||| || || | ||||| ||||||||||||||||||| |
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|
| T |
41546352 |
ggttgaaaatcagcatcaaagatggcaacatagtcacaaagtttgacatagctatgcttcattccttctttaagagcaccagctttgtaaccatttctat |
41546253 |
T |
|
| Q |
327 |
tgtccctaacttcatactttat |
348 |
Q |
| |
|
| ||||| | ||||||||||| |
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|
| T |
41546252 |
tttcccttatctcatactttat |
41546231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 132 - 363
Target Start/End: Complemental strand, 41917671 - 41917440
Alignment:
| Q |
132 |
aaaggaaattaccaaacttccagcgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttg |
231 |
Q |
| |
|
|||| ||||||||||| ||||| ||||| |||| ||| ||||| |||||||||| || | || || | ||| ||||| | ||||||||| |||||||| |
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|
| T |
41917671 |
aaagaaaattaccaaatttccaacgagcttgaataagcccaatttcaggattatgcaccataaatggtacggtacgccacaaaaaatcaggctctggttg |
41917572 |
T |
|
| Q |
232 |
aaaatcagcatcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtcc |
331 |
Q |
| |
|
||||||||||||||| || ||||||| ||||||||| |||||||||||||| |||||||| || ||||| || ||||||||||| ||||||||||||||| |
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|
| T |
41917571 |
aaaatcagcatcaaatattgcaacatgatcacattgcttcacatagctatgcttcattccttcttttaaagcccctgctttgtatccatttctattgtcc |
41917472 |
T |
|
| Q |
332 |
ctaacttcatactttatattcacacctttgct |
363 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |
|
|
| T |
41917471 |
ctaacttcatactttatattcactcctttgct |
41917440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 315
Target Start/End: Original strand, 20239043 - 20239218
Alignment:
| Q |
140 |
ttaccaaacttccagcgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaatcag |
239 |
Q |
| |
|
|||||||| |||| ||| | ||||||||| |||| ||||||||| |||||| ||||| |||| || | |||||||||||| || |||||||| |
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|
| T |
20239043 |
ttaccaaatctccaacgaccttgaacaagagcaatttcaggattaccaacaagaaaaggaatggctcttctaagaaaatcaggaggaggactaaaatcag |
20239142 |
T |
|
| Q |
240 |
catcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgta |
315 |
Q |
| |
|
||||||| || ||||||| ||||| || || ||||||||| |||| | ||| || || ||||||||||||||||| |
|
|
| T |
20239143 |
catcaaatatgacaacatattcacaatgcttgacatagctacgttttagtccttctttcaatgcacctgctttgta |
20239218 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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