View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6643_high_2 (Length: 588)

Name: NF6643_high_2
Description: NF6643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6643_high_2
NF6643_high_2
[»] chr6 (12 HSPs)
chr6 (216-579)||(16205298-16205669)
chr6 (87-157)||(1063618-1063690)
chr6 (87-129)||(13087587-13087629)
chr6 (87-123)||(16406801-16406837)
chr6 (87-129)||(1225104-1225146)
chr6 (87-157)||(6801958-6802030)
chr6 (87-159)||(7920264-7920337)
chr6 (90-157)||(13909451-13909520)
chr6 (92-129)||(28101379-28101416)
chr6 (87-157)||(1955994-1956066)
chr6 (97-129)||(6255627-6255659)
chr6 (89-129)||(34300052-34300092)
[»] chr3 (20 HSPs)
chr3 (87-157)||(24569116-24569188)
chr3 (87-157)||(37695682-37695754)
chr3 (87-157)||(30190676-30190748)
chr3 (87-157)||(51837975-51838047)
chr3 (87-157)||(37311977-37312049)
chr3 (88-157)||(36476611-36476682)
chr3 (87-157)||(43253879-43253951)
chr3 (82-157)||(44301589-44301666)
chr3 (87-129)||(1778699-1778741)
chr3 (87-129)||(3901165-3901207)
chr3 (87-129)||(5322953-5322995)
chr3 (87-129)||(14194612-14194654)
chr3 (87-129)||(24245110-24245152)
chr3 (87-129)||(28690798-28690840)
chr3 (87-129)||(30711130-30711172)
chr3 (87-129)||(49830186-49830228)
chr3 (87-129)||(54477475-54477517)
chr3 (87-157)||(23004398-23004470)
chr3 (87-157)||(12736588-12736660)
chr3 (87-157)||(19611936-19612007)
[»] chr7 (13 HSPs)
chr7 (87-157)||(7463247-7463319)
chr7 (87-152)||(2850904-2850971)
chr7 (87-157)||(34947534-34947606)
chr7 (87-157)||(24516312-24516384)
chr7 (87-155)||(42935697-42935767)
chr7 (87-151)||(22738741-22738807)
chr7 (87-129)||(35333107-35333149)
chr7 (87-129)||(44180269-44180311)
chr7 (87-157)||(8592463-8592535)
chr7 (87-157)||(11373451-11373523)
chr7 (87-157)||(21350648-21350720)
chr7 (88-129)||(32346076-32346117)
chr7 (87-157)||(43873957-43874029)
[»] chr5 (20 HSPs)
chr5 (87-157)||(27580627-27580699)
chr5 (87-157)||(31655080-31655152)
chr5 (88-157)||(6315792-6315863)
chr5 (87-129)||(4441078-4441120)
chr5 (87-129)||(11796181-11796223)
chr5 (87-157)||(8725023-8725095)
chr5 (87-157)||(1248618-1248690)
chr5 (87-157)||(7827940-7828012)
chr5 (88-157)||(27542822-27542893)
chr5 (87-129)||(32440198-32440240)
chr5 (87-157)||(29374369-29374441)
chr5 (86-157)||(29856074-29856147)
chr5 (87-156)||(40530238-40530309)
chr5 (97-157)||(6753682-6753744)
chr5 (87-129)||(9515803-9515845)
chr5 (87-129)||(37184093-37184135)
chr5 (87-120)||(3076656-3076689)
chr5 (87-157)||(22848398-22848470)
chr5 (87-156)||(4818579-4818650)
chr5 (87-157)||(21060657-21060729)
[»] chr4 (24 HSPs)
chr4 (89-157)||(49428366-49428436)
chr4 (87-159)||(16821353-16821427)
chr4 (87-157)||(49746988-49747060)
chr4 (88-157)||(5841450-5841521)
chr4 (87-156)||(2942667-2942737)
chr4 (92-130)||(8324337-8324375)
chr4 (87-151)||(36985819-36985885)
chr4 (88-129)||(28500914-28500955)
chr4 (87-153)||(38405124-38405192)
chr4 (87-157)||(52247450-52247522)
chr4 (87-157)||(11288652-11288723)
chr4 (87-152)||(42517660-42517727)
chr4 (90-129)||(42616928-42616967)
chr4 (87-152)||(50264102-50264169)
chr4 (87-129)||(462015-462057)
chr4 (87-129)||(8175602-8175644)
chr4 (87-129)||(35251946-35251988)
chr4 (87-129)||(46396905-46396947)
chr4 (87-154)||(7061686-7061755)
chr4 (87-157)||(17114467-17114539)
chr4 (87-157)||(17237318-17237390)
chr4 (87-157)||(47464387-47464459)
chr4 (87-157)||(47773041-47773113)
chr4 (87-157)||(49175956-49176028)
[»] chr1 (30 HSPs)
chr1 (87-129)||(32970586-32970628)
chr1 (87-157)||(2572496-2572567)
chr1 (87-129)||(6160478-6160520)
chr1 (87-129)||(7351693-7351735)
chr1 (89-130)||(27687297-27687338)
chr1 (90-157)||(9307654-9307723)
chr1 (87-129)||(35538700-35538742)
chr1 (87-154)||(7759245-7759314)
chr1 (88-129)||(8896352-8896393)
chr1 (87-157)||(15699149-15699221)
chr1 (87-157)||(26093421-26093493)
chr1 (87-157)||(39864138-39864210)
chr1 (92-157)||(24880903-24880970)
chr1 (87-130)||(31154184-31154227)
chr1 (87-151)||(917057-917123)
chr1 (87-129)||(12151233-12151275)
chr1 (87-129)||(31978671-31978713)
chr1 (87-154)||(36701951-36702020)
chr1 (87-154)||(36718055-36718124)
chr1 (87-129)||(17988577-17988621)
chr1 (98-157)||(22856267-22856328)
chr1 (87-154)||(24991672-24991741)
chr1 (89-152)||(34031548-34031613)
chr1 (87-157)||(40144866-40144938)
chr1 (87-157)||(49224005-49224077)
chr1 (89-155)||(3260620-3260683)
chr1 (87-157)||(31042824-31042896)
chr1 (87-131)||(35682824-35682868)
chr1 (87-157)||(41121844-41121916)
chr1 (551-579)||(45551674-45551702)
[»] chr2 (14 HSPs)
chr2 (87-157)||(39691517-39691589)
chr2 (88-157)||(37322455-37322526)
chr2 (89-157)||(14523388-14523458)
chr2 (87-157)||(15359101-15359173)
chr2 (87-157)||(43410453-43410525)
chr2 (90-149)||(43730650-43730709)
chr2 (87-129)||(8947066-8947108)
chr2 (87-129)||(19937734-19937776)
chr2 (87-157)||(16377670-16377742)
chr2 (87-157)||(35313914-35313986)
chr2 (88-129)||(45235638-45235679)
chr2 (87-157)||(16463716-16463788)
chr2 (87-157)||(43115816-43115888)
chr2 (90-130)||(43730486-43730526)
[»] chr8 (17 HSPs)
chr8 (89-153)||(36006906-36006972)
chr8 (87-129)||(7703173-7703215)
chr8 (87-157)||(44761511-44761583)
chr8 (89-128)||(5356657-5356696)
chr8 (92-149)||(32476322-32476381)
chr8 (87-129)||(7172971-7173013)
chr8 (89-157)||(10179966-10180036)
chr8 (87-129)||(31331465-31331507)
chr8 (87-129)||(41092051-41092093)
chr8 (87-155)||(42972525-42972595)
chr8 (87-152)||(1875609-1875676)
chr8 (89-129)||(4428370-4428410)
chr8 (87-123)||(9549988-9550024)
chr8 (87-157)||(10098008-10098080)
chr8 (91-157)||(17823948-17824016)
chr8 (87-157)||(31231757-31231829)
chr8 (87-127)||(39405821-39405861)
[»] scaffold0583 (1 HSPs)
scaffold0583 (87-129)||(2082-2124)
[»] scaffold1809 (1 HSPs)
scaffold1809 (87-129)||(700-742)
[»] scaffold0302 (1 HSPs)
scaffold0302 (87-129)||(16155-16197)
[»] scaffold0188 (1 HSPs)
scaffold0188 (87-129)||(6794-6836)
[»] scaffold0330 (1 HSPs)
scaffold0330 (90-157)||(5417-5486)
[»] scaffold0328 (1 HSPs)
scaffold0328 (87-157)||(7997-8069)
[»] scaffold0095 (1 HSPs)
scaffold0095 (87-127)||(50263-50303)


Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 216 - 579
Target Start/End: Original strand, 16205298 - 16205669
Alignment:
Q  216 gctacattggcattattgatattatgaagtgtttaagacatgggaaaa--aatgttagaaattaattattaaaaatgttgtaatttaatcctaaaagagt 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16205298 gctacattggcattattgatattatgaagtgtttaagacatgggaaaaaaaatgttagaaattaattattaaaaatgttgtaatttaatcctaaaagagt 16205397  T
Q  314 ccaatcttctactattttgcatatataaaaatgtagttgatattctctagataatttcttctgtgcaagaagaaatgaaagagnnnnnnnttacttggtg 413  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||    
T  16205398 ccaatcttcaactattttgcatatataaaaatgtagttgatattctctagataatttcttctgtgcaagaagaaatgaaagagaaaaaaattacttggtg 16205497  T
Q  414 ctccatggatttctgggtcttcatccacttcatcttcctcatccaagtcatgatcattagggatatgttgattttcatagtgatattgat------catg 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||      ||||    
T  16205498 ctccatggatttctgggtcttcatccacttcatcttcctcatccaagtcatgatcatcagggatatgttgattttcatagtgatattgatcatgaccatg 16205597  T
Q  508 accatgaccatgttcatgatcatcatggtgaccatgctttgtgattgtgtccttaattttcttagcctttgc 579  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16205598 accatgaccatgttcatgatcatcatggtgaccatgctttgtgattgtgtccttaattttcttagcctttgc 16205669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 1063618 - 1063690
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa-tacccc-attaattgtagttagtggagta 157  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||| |  | ||||||||||||||||||||    
T  1063618 aattgtgttgatttcaatgataaaattagtattatttactaaaatactctgagtaattgtagttagtggagta 1063690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 13087629 - 13087587
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    ||||||||||||||||||| |||||||||||| ||||||||||    
T  13087629 aattgtgttgatttcaatggtaaaattaatatcatttactaaa 13087587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 16406801 - 16406837
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattattt 123  Q
    |||||||||||||||||||||||||||| ||||||||    
T  16406801 aattgtgttgatttcaatgataaaattagtattattt 16406837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 1225146 - 1225104
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    |||||||||||||| |||  |||||||||||||||||||||||    
T  1225146 aattgtgttgatttaaatagtaaaattaatattatttactaaa 1225104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 6802030 - 6801958
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaatacccc--attaattgtagttagtggagta 157  Q
    |||| |||||||||  ||| |||||||||||| ||||||||||   |||  ||||||||||||||||||||||    
T  6802030 aattatgttgattttgatggtaaaattaatatcatttactaaaacgcccttattaattgtagttagtggagta 6801958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 159
Target Start/End: Complemental strand, 7920337 - 7920264
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttact-aaataccccattaattgtagttagtggagtatt 159  Q
    |||| |||||||||||||| ||||||||| |  ||||||| ||||| |  ||||||||||||||||| ||||||    
T  7920337 aattttgttgatttcaatggtaaaattaaaaccatttactaaaatatcttattaattgtagttagtgaagtatt 7920264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 157
Target Start/End: Complemental strand, 13909520 - 13909451
Alignment:
Q  90 tgtgttgatttcaatgataaaattaatattatttactaaa-tacccc-attaattgtagttagtggagta 157  Q
    |||||||||||||||| |||||||| |   |||||||||| |||||  ||||||||||||||||||||||    
T  13909520 tgtgttgatttcaatggtaaaattagtgacatttactaaaatacccttattaattgtagttagtggagta 13909451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 28101379 - 28101416
Alignment:
Q  92 tgttgatttcaatgataaaattaatattatttactaaa 129  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  28101379 tgttgatttcaatgataaaattagtatcatttactaaa 28101416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 1955994 - 1956066
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaa-atac-cccattaattgtagttagtggagta 157  Q
    |||||| |||||||||||| |||||||| ||| ||||||||| |||| |  ||||||||||||||||| ||||    
T  1955994 aattgtattgatttcaatggtaaaattagtatcatttactaatatactcttattaattgtagttagtgaagta 1956066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 97 - 129
Target Start/End: Original strand, 6255627 - 6255659
Alignment:
Q  97 atttcaatgataaaattaatattatttactaaa 129  Q
    |||||||||||||||||||||| ||||||||||    
T  6255627 atttcaatgataaaattaatatcatttactaaa 6255659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 34300092 - 34300052
Alignment:
Q  89 ttgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    |||| ||||||| ||||||||||||| ||||||||||||||    
T  34300092 ttgttttgatttgaatgataaaattagtattatttactaaa 34300052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 24569116 - 24569188
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttact-aaataccc-cattaattgtagttagtggagta 157  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||  ||||||||||||||||||||||    
T  24569116 aattgtgttgatttcaatggtaaaattaatattatttactaaaatacccttattaattgtagttagtggagta 24569188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 37695682 - 37695754
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaatacccc--attaattgtagttagtggagta 157  Q
    ||||||||||||||||||| |||||||||||| ||||||||||   |||  ||||||||||||||||||||||    
T  37695682 aattgtgttgatttcaatggtaaaattaatatcatttactaaaacacccttattaattgtagttagtggagta 37695754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 30190676 - 30190748
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttact-aaataccc-cattaattgtagttagtggagta 157  Q
    ||||||||||||||||||| |||||||| ||| ||||||| ||||||||  ||||||||||||||||||||||    
T  30190676 aattgtgttgatttcaatggtaaaattagtatcatttactaaaatacccttattaattgtagttagtggagta 30190748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 51837975 - 51838047
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttact-aaataccc-cattaattgtagttagtggagta 157  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||  |||| |||||| ||||||||||    
T  51837975 aattgtgttgatttcaatgataaaattaatatcatttactaaaatacccttattagttgtagctagtggagta 51838047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 37312049 - 37311977
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaatacccc--attaattgtagttagtggagta 157  Q
    ||||||||||||||||||| |||||||| ||  |||||||||| | |||  ||||||||||||||||||||||    
T  37312049 aattgtgttgatttcaatggtaaaattagtagcatttactaaaaaacccttattaattgtagttagtggagta 37311977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 88 - 157
Target Start/End: Complemental strand, 36476682 - 36476611
Alignment:
Q  88 attgtgttgatttcaatgataaaattaatattatttact-aaataccc-cattaattgtagttagtggagta 157  Q
    |||||||||||| ||||| |||||||||||| ||||||| ||||||||  |||||||||||||||| |||||    
T  36476682 attgtgttgattgcaatggtaaaattaatatcatttactaaaatacccttattaattgtagttagtagagta 36476611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 43253879 - 43253951
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaatacccc--attaattgtagttagtggagta 157  Q
    ||||||||||||||||||| |||||||| ||  ||||||||||   |||  ||||||||||||||||||||||    
T  43253879 aattgtgttgatttcaatggtaaaattagtagcatttactaaaacacccttattaattgtagttagtggagta 43253951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 82 - 157
Target Start/End: Complemental strand, 44301666 - 44301589
Alignment:
Q  82 tattaaattgtgttgatttcaatgataaaattaatattatttact-aaataccc-cattaattgtagttagtggagta 157  Q
    |||| |||| ||||||||||||||||||||||| ||| ||||||| ||||||||  || ||||||| |||||||||||    
T  44301666 tatttaattatgttgatttcaatgataaaattagtatcatttactaaaatacccttatcaattgtaattagtggagta 44301589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 1778741 - 1778699
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    ||||||||||||||||||||||||||||||   ||||||||||    
T  1778741 aattgtgttgatttcaatgataaaattaatgacatttactaaa 1778699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 3901165 - 3901207
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    |||||| || |||||||||||||||||||||| ||||||||||    
T  3901165 aattgtattaatttcaatgataaaattaatatcatttactaaa 3901207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 5322953 - 5322995
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    |||| ||||||||||| ||||||||||||||| ||||||||||    
T  5322953 aattatgttgatttcagtgataaaattaatatcatttactaaa 5322995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 14194654 - 14194612
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    |||||||||||||||||||||||||||| ||  ||||||||||    
T  14194654 aattgtgttgatttcaatgataaaattagtaccatttactaaa 14194612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 24245110 - 24245152
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    |||| ||||||||||||| ||||||||| ||||||||||||||    
T  24245110 aattatgttgatttcaataataaaattagtattatttactaaa 24245152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 28690798 - 28690840
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    ||||||||||||||||| | |||||||||||| ||||||||||    
T  28690798 aattgtgttgatttcaacggtaaaattaatatcatttactaaa 28690840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 30711172 - 30711130
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    |||| ||||||||| ||||||||||||||||| ||||||||||    
T  30711172 aattatgttgattttaatgataaaattaatatcatttactaaa 30711130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 49830228 - 49830186
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    ||||||||||||||||||  |||||||||||| ||||||||||    
T  49830228 aattgtgttgatttcaatagtaaaattaatatcatttactaaa 49830186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 54477475 - 54477517
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    |||||||||||||| |||| |||||||||||| ||||||||||    
T  54477475 aattgtgttgattttaatggtaaaattaatatcatttactaaa 54477517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 23004398 - 23004470
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaatacccc--attaattgtagttagtggagta 157  Q
    |||||||| |||||||||| |||||||| || ||| |||||||   |||  ||||||||||||||||||||||    
T  23004398 aattgtgtcgatttcaatggtaaaattagtagtatatactaaaacacccttattaattgtagttagtggagta 23004470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 12736588 - 12736660
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttacta-aataccc-cattaattgtagttagtggagta 157  Q
    |||||||||||||  ||||||||||||| ||| |||||||| |||||||  |||||||||| |||||| ||||    
T  12736588 aattgtgttgattctaatgataaaattagtatcatttactacaatacccttattaattgtacttagtgtagta 12736660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 19612007 - 19611936
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa-tacccc-attaattgtagttagtggagta 157  Q
    ||||||||||||||||||| |||||||| ||| |||||||||| || ||  ||||||||| ||||||||||||    
T  19612007 aattgtgttgatttcaatgttaaaatta-tataatttactaaaatatccttattaattgttgttagtggagta 19611936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 7463319 - 7463247
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttac-taaataccc-cattaattgtagttagtggagta 157  Q
    |||||||||||||||||||||||||||| ||  |||||| ||||||||| |||||||||||||||||||||||    
T  7463319 aattgtgttgatttcaatgataaaattagtagcatttacttaaataccctcattaattgtagttagtggagta 7463247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 87 - 152
Target Start/End: Original strand, 2850904 - 2850971
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttact-aaataccc-cattaattgtagttagtg 152  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||    
T  2850904 aattatgttgatttcaatgataaaattaatattatttactaaaataccctcattaattatagttagtg 2850971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 34947606 - 34947534
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaatacccc--attaattgtagttagtggagta 157  Q
    ||||||||||||||||||| |||||||| ||| ||||||||||   |||  ||||||||||||||||||||||    
T  34947606 aattgtgttgatttcaatggtaaaattattatcatttactaaaacacccttattaattgtagttagtggagta 34947534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 24516312 - 24516384
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttact--aaataccccattaattgtagttagtggagta 157  Q
    ||||||||||||||||||| |||||||| ||  |||||||  ||| |||  ||||||||||||||||||||||    
T  24516312 aattgtgttgatttcaatggtaaaattagtaacatttactaaaaaaaccttattaattgtagttagtggagta 24516384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 155
Target Start/End: Complemental strand, 42935767 - 42935697
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaatacccc--attaattgtagttagtggag 155  Q
    ||||||||||||||  ||| |||||||||||| ||||||||||   |||  ||||||||||||||||||||    
T  42935767 aattgtgttgattttgatggtaaaattaatatcatttactaaaacacccttattaattgtagttagtggag 42935697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 151
Target Start/End: Complemental strand, 22738807 - 22738741
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa-taccc-cattaattgtagttagt 151  Q
    |||||||| |||||||||| |||||||| ||| |||||||||| || || |||||||||||||||||    
T  22738807 aattgtgtagatttcaatggtaaaattagtatcatttactaaaatatcctcattaattgtagttagt 22738741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 35333149 - 35333107
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    |||||||||||||||||| ||| ||||||||||||||| ||||    
T  35333149 aattgtgttgatttcaattatataattaatattatttattaaa 35333107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 44180311 - 44180269
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    ||||||||||||||||||| |||||||| ||| ||||||||||    
T  44180311 aattgtgttgatttcaatggtaaaattagtataatttactaaa 44180269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 8592463 - 8592535
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaatacccc--attaattgtagttagtggagta 157  Q
    ||||||||||||||||||| | |||||| || |||||| ||||   |||  ||||||||||||||||||||||    
T  8592463 aattgtgttgatttcaatggttaaattagtagtatttaataaaacacccttattaattgtagttagtggagta 8592535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 11373451 - 11373523
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaatacccc--attaattgtagttagtggagta 157  Q
    ||||||||||||||| ||| |||||||| ||  ||||||||||   |||  ||||||||||||||||||||||    
T  11373451 aattgtgttgatttcgatggtaaaattagtagcatttactaaaacacccttattaattgtagttagtggagta 11373523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 21350648 - 21350720
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaatacccc--attaattgtagttagtggagta 157  Q
    ||||||||||||||||||| ||||| || |  |||||||||||   |||  ||||||||||||||||||||||    
T  21350648 aattgtgttgatttcaatggtaaaaatagttgtatttactaaaacacccttattaattgtagttagtggagta 21350720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 32346076 - 32346117
Alignment:
Q  88 attgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    |||||||||||||||||| |||||||||||| || |||||||    
T  32346076 attgtgttgatttcaatggtaaaattaatatcatctactaaa 32346117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 43874029 - 43873957
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaatacccc--attaattgtagttagtggagta 157  Q
    ||||||||||||||  ||| |||||||||||| ||||||||||   |||  ||||| ||||||||||||||||    
T  43874029 aattgtgttgattttgatggtaaaattaatatcatttactaaaacacccttattaaatgtagttagtggagta 43873957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 27580699 - 27580627
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttact-aaataccc-cattaattgtagttagtggagta 157  Q
    ||||||||||||||||||| |||||||||||| ||||||| ||||||||  ||||||||||||||||||||||    
T  27580699 aattgtgttgatttcaatggtaaaattaatatcatttactaaaatacccttattaattgtagttagtggagta 27580627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 31655152 - 31655080
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttacta-aata-ccccattaattgtagttagtggagta 157  Q
    ||||||||||||||||||| |||||||||||| |||||||| |||| ||  ||||||||||||||||||||||    
T  31655152 aattgtgttgatttcaatggtaaaattaatatcatttactataatatccttattaattgtagttagtggagta 31655080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 157
Target Start/End: Original strand, 6315792 - 6315863
Alignment:
Q  88 attgtgttgatttcaatgataaaattaatattatttact-aaataccc-cattaattgtagttagtggagta 157  Q
    |||||||| |||||||||||||||||||||| ||||||| ||||||||  ||||||||||||||||| ||||    
T  6315792 attgtgttaatttcaatgataaaattaatatcatttactaaaatacccttattaattgtagttagtgaagta 6315863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 4441120 - 4441078
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  4441120 aattgtgttgattttaatgataaaattaatattatttactaaa 4441078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 11796181 - 11796223
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  11796181 aattgtgttgattttaatgataaaattaatattatttactaaa 11796223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 8725023 - 8725095
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaatacccc--attaattgtagttagtggagta 157  Q
    ||||||||||||||||||| |||||||||||| ||||||||||   | |  ||||||||||||||||||||||    
T  8725023 aattgtgttgatttcaatggtaaaattaatatcatttactaaaacacacttattaattgtagttagtggagta 8725095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 1248618 - 1248690
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttact-aaataccc-cattaattgtagttagtggagta 157  Q
    |||| |||||||||||||| |||||||||||| ||||||| ||||||||  ||||||||||||||||| ||||    
T  1248618 aattatgttgatttcaatggtaaaattaatatcatttactaaaatacccttattaattgtagttagtgaagta 1248690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 7827940 - 7828012
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttact-aaataccc-cattaattgtagttagtggagta 157  Q
    ||||||||||||||||||| |||||||| ||| ||||| | ||||||||  ||||||||||||||||||||||    
T  7827940 aattgtgttgatttcaatggtaaaattagtatcatttattaaaatacccttattaattgtagttagtggagta 7828012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 88 - 157
Target Start/End: Complemental strand, 27542893 - 27542822
Alignment:
Q  88 attgtgttgatttcaatgataaaattaatattatttactaaa-tacccc-attaattgtagttagtggagta 157  Q
    |||||||||||||||||| |||||||||||  |||||||||| ||| |  ||||||||||||||||||||||    
T  27542893 attgtgttgatttcaatggtaaaattaataccatttactaaaatactcttattaattgtagttagtggagta 27542822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 32440240 - 32440198
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    ||||||||| |||||||||||||||||||||| ||||||||||    
T  32440240 aattgtgttaatttcaatgataaaattaatatcatttactaaa 32440198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 29374441 - 29374369
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaataccc--cattaattgtagttagtggagta 157  Q
    |||| ||||||||||||||||||||||||||  ||||||||||   ||   ||||||||||||||||||||||    
T  29374441 aattatgttgatttcaatgataaaattaatagcatttactaaaagacctttattaattgtagttagtggagta 29374369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 86 - 157
Target Start/End: Complemental strand, 29856147 - 29856074
Alignment:
Q  86 aaattgtgttgatttcaatgataaaattaatattatttact-aaatac-cccattaattgtagttagtggagta 157  Q
    |||||| |||||||||||||||||||||||||| | || || |||||| |  ||||||||||||||||||||||    
T  29856147 aaattgcgttgatttcaatgataaaattaatatcacttgctaaaatactcttattaattgtagttagtggagta 29856074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 156
Target Start/End: Original strand, 40530238 - 40530309
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaatacccc--attaattgtagttagtggagt 156  Q
    ||||||||||||||||||| |||||||| ||  ||||||||||   |||  |||||||||||||||||||||    
T  40530238 aattgtgttgatttcaatggtaaaattagtagcatttactaaaacacccttattaattgtagttagtggagt 40530309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 157
Target Start/End: Original strand, 6753682 - 6753744
Alignment:
Q  97 atttcaatgataaaattaatattatttactaaa-tacccc-attaattgtagttagtggagta 157  Q
    ||||||||| |||||||| ||| |||||||||| |||||  ||||||||||||||||||||||    
T  6753682 atttcaatggtaaaattagtatcatttactaaaatacccttattaattgtagttagtggagta 6753744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 9515845 - 9515803
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    ||||||||||||||||||| |||||||| ||| ||||||||||    
T  9515845 aattgtgttgatttcaatggtaaaattagtatcatttactaaa 9515803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 37184093 - 37184135
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    ||||| ||||||||||||| |||||||||||| ||||||||||    
T  37184093 aattgagttgatttcaatggtaaaattaatatcatttactaaa 37184135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 120
Target Start/End: Complemental strand, 3076689 - 3076656
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatatta 120  Q
    |||||||||||||||||||||||||||| |||||    
T  3076689 aattgtgttgatttcaatgataaaattagtatta 3076656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 22848398 - 22848470
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaatacccc--attaattgtagttagtggagta 157  Q
    ||||||||||||||||||  ||||||||||| |||||| ||||   |||  |||||||||||||| |||||||    
T  22848398 aattgtgttgatttcaatagtaaaattaatagtatttattaaaacacccttattaattgtagttaatggagta 22848470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 87 - 156
Target Start/End: Complemental strand, 4818650 - 4818579
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaatacccc--attaattgtagttagtggagt 156  Q
    ||||||||||||||||||  |||||||| ||  ||||||||||   |||  |||||||||||||||||||||    
T  4818650 aattgtgttgatttcaattgtaaaattagtagcatttactaaaacacccttattaattgtagttagtggagt 4818579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 21060729 - 21060657
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa-tacccc-attaattgtagttagtggagta 157  Q
    ||||||||| ||||  ||| |||||||| |||||||||||||| ||| |  ||||||||||||||||||||||    
T  21060729 aattgtgtttattttgatggtaaaattagtattatttactaaaatactcttattaattgtagttagtggagta 21060657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 89 - 157
Target Start/End: Original strand, 49428366 - 49428436
Alignment:
Q  89 ttgtgttgatttcaatgataaaattaatattatttact-aaataccc-cattaattgtagttagtggagta 157  Q
    ||||||||||||||||| |||||||||||| ||||||| ||||||||  ||||||||||||||||||||||    
T  49428366 ttgtgttgatttcaatggtaaaattaatataatttactaaaatacccttattaattgtagttagtggagta 49428436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 87 - 159
Target Start/End: Original strand, 16821353 - 16821427
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttacta-aata-ccccattaattgtagttagtggagtatt 159  Q
    |||||||||||||||||||||||||||| ||| |||||||| |||| ||  ||||||| ||||||||||||||||    
T  16821353 aattgtgttgatttcaatgataaaattagtatcatttactataatatccttattaattatagttagtggagtatt 16821427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 49747060 - 49746988
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttact-aaatacc-ccattaattgtagttagtggagta 157  Q
    |||||||||||||||||||||||||||| || |||||||| |||||||  |||||||| |||||||| |||||    
T  49747060 aattgtgttgatttcaatgataaaattagtagtatttactaaaataccttcattaattatagttagttgagta 49746988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 88 - 157
Target Start/End: Original strand, 5841450 - 5841521
Alignment:
Q  88 attgtgttgatttcaatgataaaattaatattatttact-aaataccc-cattaattgtagttagtggagta 157  Q
    |||| |||||||| |||| |||||||||||| ||||||| ||||||||  ||||||||||||||||||||||    
T  5841450 attgcgttgattttaatggtaaaattaatatcatttactaaaatacccttattaattgtagttagtggagta 5841521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 156
Target Start/End: Original strand, 2942667 - 2942737
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttact-aaataccccattaattgtagttagtggagt 156  Q
    ||||||||||||||| |||||||||||| ||  ||||||| ||| |||  |||||||||||||||||||||    
T  2942667 aattgtgttgatttcgatgataaaattagtagcatttactaaaacaccttattaattgtagttagtggagt 2942737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 130
Target Start/End: Complemental strand, 8324375 - 8324337
Alignment:
Q  92 tgttgatttcaatgataaaattaatattatttactaaat 130  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  8324375 tgttgattttaatgataaaattaatattatttactaaat 8324337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 151
Target Start/End: Complemental strand, 36985885 - 36985819
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttact-aaataccc-cattaattgtagttagt 151  Q
    ||||||||||||||||||| |||||||| ||| ||||||| ||||||||  ||||||||||||||||    
T  36985885 aattgtgttgatttcaatggtaaaattagtatcatttactaaaatacccgtattaattgtagttagt 36985819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 28500914 - 28500955
Alignment:
Q  88 attgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    |||||||||||||||||| |||||||||||| ||||||||||    
T  28500914 attgtgttgatttcaatggtaaaattaatatcatttactaaa 28500955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 38405124 - 38405192
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttact-aaataccc-cattaattgtagttagtgg 153  Q
    |||| ||||||||| |||| |||||||||||| ||||||| ||||||||  ||||||||||||||||||    
T  38405124 aattctgttgatttaaatggtaaaattaatatcatttactaaaatacccttattaattgtagttagtgg 38405192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 52247450 - 52247522
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa-tacccc-attaattgtagttagtggagta 157  Q
    ||||||||| ||||||||| |||||||||||  |||||||||| || ||  ||||||||||||||||||||||    
T  52247450 aattgtgttaatttcaatggtaaaattaatacaatttactaaaatatccttattaattgtagttagtggagta 52247522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 11288652 - 11288723
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttact-aaataccccattaattgtagttagtggagta 157  Q
    |||||| ||||||||||||  ||||||||||| ||||||| ||||| |  ||||||||||||| ||||||||    
T  11288652 aattgtattgatttcaatggcaaaattaatatcatttactaaaatatcttattaattgtagttggtggagta 11288723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 152
Target Start/End: Original strand, 42517660 - 42517727
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttact-aaataccc-cattaattgtagttagtg 152  Q
    ||||||||||||||||||| ||||||||| || ||||||| ||||||||  ||||||| |||||||||    
T  42517660 aattgtgttgatttcaatggtaaaattaagatcatttactaaaatacccttattaattatagttagtg 42517727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 129
Target Start/End: Original strand, 42616928 - 42616967
Alignment:
Q  90 tgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    |||||||||||||||| |||||||||||| ||||||||||    
T  42616928 tgtgttgatttcaatggtaaaattaatatcatttactaaa 42616967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 152
Target Start/End: Original strand, 50264102 - 50264169
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa-tacccc-attaattgtagttagtg 152  Q
    ||||||||||||||||||| ||||||||| || |||||||||| ||| |  |||||||||||||||||    
T  50264102 aattgtgttgatttcaatgttaaaattaacatcatttactaaaatactcttattaattgtagttagtg 50264169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 462057 - 462015
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    |||||| |||||||||||| ||||| |||||||||||||||||    
T  462057 aattgtattgatttcaatggtaaaagtaatattatttactaaa 462015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 8175602 - 8175644
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    ||||||||||||||||||| |||||||||||| ||||| ||||    
T  8175602 aattgtgttgatttcaatggtaaaattaatatcatttattaaa 8175644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 35251988 - 35251946
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    ||||||| | |||||||||||||||||||||| ||||||||||    
T  35251988 aattgtggttatttcaatgataaaattaatatcatttactaaa 35251946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 46396905 - 46396947
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    ||||||||||||||||||| |||||||||||  ||||||||||    
T  46396905 aattgtgttgatttcaatggtaaaattaatagcatttactaaa 46396947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 154
Target Start/End: Original strand, 7061686 - 7061755
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttacta-aata-ccccattaattgtagttagtgga 154  Q
    ||||||||||||||||||| |||||||| ||| |||||||| |||| |   |||||||||||||||||||    
T  7061686 aattgtgttgatttcaatggtaaaattagtatcatttactataatatctttattaattgtagttagtgga 7061755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 17114539 - 17114467
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaatacccc--attaattgtagttagtggagta 157  Q
    ||||||||||||||  ||| |||||||| ||| ||||||||||   |||  ||||||||||||||||||||||    
T  17114539 aattgtgttgattttgatggtaaaattagtatcatttactaaaacacccttattaattgtagttagtggagta 17114467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 17237318 - 17237390
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa--taccccattaattgtagttagtggagta 157  Q
    ||||||||||||| ||||| |||||||| ||  ||||||||||   |||  ||||||||||||||||||||||    
T  17237318 aattgtgttgattgcaatggtaaaattagtaacatttactaaaacaaccttattaattgtagttagtggagta 17237390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 47464387 - 47464459
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaatacccc--attaattgtagttagtggagta 157  Q
    ||||||||||||||||||| |||||||| ||  |||||||||| | | |  ||||||||||||| ||||||||    
T  47464387 aattgtgttgatttcaatggtaaaattagtagcatttactaaaaaactcttattaattgtagttggtggagta 47464459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 47773041 - 47773113
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaatacccc--attaattgtagttagtggagta 157  Q
    ||||||||||||||  ||| |||||||| ||| ||||||||||   |||  ||||||||||||||||||||||    
T  47773041 aattgtgttgattttgatggtaaaattagtatcatttactaaaacacccttattaattgtagttagtggagta 47773113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 49175956 - 49176028
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa--taccccattaattgtagttagtggagta 157  Q
    |||||||  ||||||||||||||||||| ||| ||||||||||   |||  ||||||||||||||| ||||||    
T  49175956 aattgtggagatttcaatgataaaattagtatcatttactaaaataaccttattaattgtagttagcggagta 49176028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 32970586 - 32970628
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  32970586 aattgtgttgatttcaatgataaaattaatattatttactaaa 32970628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 2572567 - 2572496
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaatac-cccattaattgtagttagtggagta 157  Q
    |||||| |||||||||||| |||||||||||| |||||||||||||    ||||||||||||||||||||||    
T  2572567 aattgtattgatttcaatggtaaaattaatatcatttactaaatacaattattaattgtagttagtggagta 2572496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 6160478 - 6160520
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  6160478 aattgtgttgatttcaatgataaaattagtattatttactaaa 6160520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 7351735 - 7351693
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  7351735 aattgtgttgattttaatgataaaattaatattatttactaaa 7351693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 89 - 130
Target Start/End: Complemental strand, 27687338 - 27687297
Alignment:
Q  89 ttgtgttgatttcaatgataaaattaatattatttactaaat 130  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  27687338 ttgtgttgatttcaatggtaaaattaatattatttactaaat 27687297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 157
Target Start/End: Complemental strand, 9307723 - 9307654
Alignment:
Q  90 tgtgttgatttcaatgataaaattaatattatttactaaatacccc--attaattgtagttagtggagta 157  Q
    ||||||||||||||||||||||||||||  ||||||||||   |||   |||||||||||||||||||||    
T  9307723 tgtgttgatttcaatgataaaattaatagcatttactaaaacacccttgttaattgtagttagtggagta 9307654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 35538742 - 35538700
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    ||||||||||||||||||||||||||  |||||||||||||||    
T  35538742 aattgtgttgatttcaatgataaaatggatattatttactaaa 35538700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 87 - 154
Target Start/End: Complemental strand, 7759314 - 7759245
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa-tacccc-attaattgtagttagtgga 154  Q
    ||||||||||||||||||| | |||||||||| |||||||||| ||| |  |||||||||||||||||||    
T  7759314 aattgtgttgatttcaatggtgaaattaatatcatttactaaaatactcttattaattgtagttagtgga 7759245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 8896352 - 8896393
Alignment:
Q  88 attgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    |||||||||||||||||| |||||||||||| ||||||||||    
T  8896352 attgtgttgatttcaatggtaaaattaatatcatttactaaa 8896393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 15699221 - 15699149
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaatacccc--attaattgtagttagtggagta 157  Q
    ||||||||||||||  ||| |||||||||||| ||||||||||   |||  ||||||||||||||||||||||    
T  15699221 aattgtgttgattttgatggtaaaattaatatcatttactaaaacacccttattaattgtagttagtggagta 15699149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 26093493 - 26093421
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa-tacccc-attaattgtagttagtggagta 157  Q
    ||||||||||||||||||| |||||||||||| ||||| |||| || ||  ||||||||||||||||| ||||    
T  26093493 aattgtgttgatttcaatggtaaaattaatatcatttattaaaatatccttattaattgtagttagtgaagta 26093421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 39864210 - 39864138
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa-tacccc-attaattgtagttagtggagta 157  Q
    ||||||||||||||||||| |||||||| ||  |||||||||| ||| |  ||||||||||||||||||||||    
T  39864210 aattgtgttgatttcaatggtaaaattagtagcatttactaaaatactcttattaattgtagttagtggagta 39864138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 24880970 - 24880903
Alignment:
Q  92 tgttgatttcaatgataaaattaatattatttact-aaatac-cccattaattgtagttagtggagta 157  Q
    |||||||||||||| |||||||||||| ||||||| ||||||    ||||||||||||||||||||||    
T  24880970 tgttgatttcaatggtaaaattaatatcatttactaaaatacttttattaattgtagttagtggagta 24880903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 130
Target Start/End: Complemental strand, 31154227 - 31154184
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaat 130  Q
    |||||||||||||| ||||||||||||| |||||| ||||||||    
T  31154227 aattgtgttgattttaatgataaaattagtattatctactaaat 31154184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 151
Target Start/End: Complemental strand, 917123 - 917057
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttact-aaataccc-cattaattgtagttagt 151  Q
    |||| ||||||||| |||| |||||||||||| ||||||| ||||||||  ||||||||||||||||    
T  917123 aattatgttgatttaaatggtaaaattaatatcatttactaaaatacccttattaattgtagttagt 917057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 12151275 - 12151233
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    |||| ||||||||||||||||||||||| ||| ||||||||||    
T  12151275 aattatgttgatttcaatgataaaattagtatcatttactaaa 12151233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 31978671 - 31978713
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    ||||||||||||||||||| |||||||||||| | ||||||||    
T  31978671 aattgtgttgatttcaatggtaaaattaatatcacttactaaa 31978713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 154
Target Start/End: Complemental strand, 36702020 - 36701951
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaatacccc--attaattgtagttagtgga 154  Q
    |||| |||||||||||||| |||||||| ||| ||||||||||   |||  |||||||||||||||||||    
T  36702020 aattatgttgatttcaatggtaaaattagtatcatttactaaaatgcccttattaattgtagttagtgga 36701951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 154
Target Start/End: Complemental strand, 36718124 - 36718055
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaatacccc--attaattgtagttagtgga 154  Q
    |||| |||||||||||||| |||||||| ||| ||||||||||   |||  |||||||||||||||||||    
T  36718124 aattatgttgatttcaatggtaaaattagtatcatttactaaaatgcccttattaattgtagttagtgga 36718055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 17988577 - 17988621
Alignment:
Q  87 aattgtgttgatttcaatgataaaatta--atattatttactaaa 129  Q
    ||||||||||||||||||| ||||||||  |||||||||||||||    
T  17988577 aattgtgttgatttcaatgttaaaattagtatattatttactaaa 17988621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 157
Target Start/End: Original strand, 22856267 - 22856328
Alignment:
Q  98 tttcaatgataaaattaatattatttactaaa-tacccca-ttaattgtagttagtggagta 157  Q
    ||||||| ||||||||||||  |||||||||| ||||| | |||||||||||||||||||||    
T  22856267 tttcaatcataaaattaataccatttactaaaataccctaattaattgtagttagtggagta 22856328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 154
Target Start/End: Original strand, 24991672 - 24991741
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttacta-aatacc-ccattaattgtagttagtgga 154  Q
    ||||||||||||||||| | ||||||||||| ||||||||| || |||   |||||||||||||||||||    
T  24991672 aattgtgttgatttcaacggtaaaattaatagtatttactacaacacctttattaattgtagttagtgga 24991741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 152
Target Start/End: Original strand, 34031548 - 34031613
Alignment:
Q  89 ttgtgttgatttcaatgataaaattaatattatttactaaa-tacccc-attaattgtagttagtg 152  Q
    ||||||||||| ||||| |||||||||||| |||||||||| ||||   |||||||||||||||||    
T  34031548 ttgtgttgattccaatggtaaaattaatatcatttactaaaataccgttattaattgtagttagtg 34031613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 40144866 - 40144938
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaatacccc--attaattgtagttagtggagta 157  Q
    ||||||||||||||  ||| |||||||||||| ||||||||||   |||  |||||||||||||| |||||||    
T  40144866 aattgtgttgattttgatggtaaaattaatatcatttactaaaacacccttattaattgtagttaatggagta 40144938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 49224005 - 49224077
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaatacccc--attaattgtagttagtggagta 157  Q
    ||||||||||||||  ||| |||||||| ||| ||||||||||   |||  ||||||||||||||||||||||    
T  49224005 aattgtgttgattttgatggtaaaattagtatcatttactaaaacacccttattaattgtagttagtggagta 49224077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 89 - 155
Target Start/End: Complemental strand, 3260683 - 3260620
Alignment:
Q  89 ttgtgttgatttcaatgataaaattaatattatttactaaataccccattaattgtagttagtggag 155  Q
    |||||||||||||||| |||||| || ||||| ||||||   |||  ||||||||||||||||||||    
T  3260683 ttgtgttgatttcaataataaaagtagtattaattacta---accttattaattgtagttagtggag 3260620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 31042896 - 31042824
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttact-aaataccc-cattaattgtagttagtggagta 157  Q
    ||||||||||||||||||| |||||||| ||| |||||||  |||||||  ||||||||||| ||||| ||||    
T  31042896 aattgtgttgatttcaatggtaaaattagtatcatttactgtaatacccttattaattgtaggtagtgaagta 31042824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 35682824 - 35682868
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaata 131  Q
    ||||||||||||||||||||||| |||| ||| ||||| ||||||    
T  35682824 aattgtgttgatttcaatgataacattagtatcatttattaaata 35682868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 41121844 - 41121916
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa-tacccc-attaattgtagttagtggagta 157  Q
    ||||||||||||||  ||| ||||||||  || |||||||||| |||||  ||||||||||||||||||||||    
T  41121844 aattgtgttgattttgatggtaaaattagcataatttactaaaatacccttattaattgtagttagtggagta 41121916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 551 - 579
Target Start/End: Original strand, 45551674 - 45551702
Alignment:
Q  551 attgtgtccttaattttcttagcctttgc 579  Q
    |||||||||||||||||||||||||||||    
T  45551674 attgtgtccttaattttcttagcctttgc 45551702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 39691589 - 39691517
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa-tacccc-attaattgtagttagtggagta 157  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||| |  |||||||| |||||||||||||    
T  39691589 aattgtgttgatttcaatgataaaattaatatcatttactaaaatactcttattaattgcagttagtggagta 39691517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 157
Target Start/End: Complemental strand, 37322526 - 37322455
Alignment:
Q  88 attgtgttgatttcaatgataaaattaatattatttact-aaataccc-cattaattgtagttagtggagta 157  Q
    |||||||||||||||||| |||||||||||| ||||| | ||||||||  ||||||||||||||||||||||    
T  37322526 attgtgttgatttcaatggtaaaattaatatcatttattaaaatacccttattaattgtagttagtggagta 37322455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 89 - 157
Target Start/End: Original strand, 14523388 - 14523458
Alignment:
Q  89 ttgtgttgatttcaatgataaaattaatattatttactaaa-tacccc-attaattgtagttagtggagta 157  Q
    ||||||||||||||||| |||||||||||| |||||||||| || ||  ||||||||||||||||||||||    
T  14523388 ttgtgttgatttcaatggtaaaattaatatcatttactaaaatatccttattaattgtagttagtggagta 14523458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 15359101 - 15359173
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaatacccc--attaattgtagttagtggagta 157  Q
    ||||||||||||||  |||||||||||||||| ||||||||||   |||  ||||||||||||||||||||||    
T  15359101 aattgtgttgattttgatgataaaattaatatcatttactaaaacacccttattaattgtagttagtggagta 15359173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 43410525 - 43410453
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa-tacccc-attaattgtagttagtggagta 157  Q
    |||||||||||| ||||||||||||||||||| |||||||||| || ||  |||||||||||||| |||||||    
T  43410525 aattgtgttgatatcaatgataaaattaatatcatttactaaaatatccttattaattgtagttaatggagta 43410453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 90 - 149
Target Start/End: Complemental strand, 43730709 - 43730650
Alignment:
Q  90 tgtgttgatttcaatgataaaattaatattatttactaaataccccattaattgtagtta 149  Q
    ||||||||||| |||| |||||||||||| |||||||||| |||  ||||||||||||||    
T  43730709 tgtgttgattttaatggtaaaattaatatcatttactaaaaaccttattaattgtagtta 43730650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 8947066 - 8947108
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    |||||||||||||||||||||||||||| || |||||||||||    
T  8947066 aattgtgttgatttcaatgataaaattagtaatatttactaaa 8947108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 19937776 - 19937734
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    ||||||||||||||||||| |||||||||||| ||||||||||    
T  19937776 aattgtgttgatttcaatggtaaaattaatatcatttactaaa 19937734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 16377670 - 16377742
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa--taccccattaattgtagttagtggagta 157  Q
    ||||||||||||| ||||| |||||||||||| |||||| |||   |||  ||||||||||||||||||||||    
T  16377670 aattgtgttgattacaatggtaaaattaatatcatttaccaaaataaccttattaattgtagttagtggagta 16377742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 35313986 - 35313914
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa--taccccattaattgtagttagtggagta 157  Q
    ||||||||||||||||||| |||||||| || |||||| ||||   |||  ||||||||||||||||||||||    
T  35313986 aattgtgttgatttcaatggtaaaattagtagtatttattaaagcaaccttattaattgtagttagtggagta 35313914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 45235679 - 45235638
Alignment:
Q  88 attgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    |||||||||||||||||| |||||||||||| ||||||||||    
T  45235679 attgtgttgatttcaatggtaaaattaatatcatttactaaa 45235638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 16463788 - 16463716
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaatacccc--attaattgtagttagtggagta 157  Q
    ||||||||||||||  ||| |||||||| ||| ||||||||||   |||  ||||||||||||||||||||||    
T  16463788 aattgtgttgattttgatggtaaaattagtatcatttactaaaacacccttattaattgtagttagtggagta 16463716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 43115816 - 43115888
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa-tacccc-attaattgtagttagtggagta 157  Q
    |||||||||||||||||||||||| ||| ||  |||||||||| ||| |  ||| ||||||||||||||||||    
T  43115816 aattgtgttgatttcaatgataaagttagtagcatttactaaaatactcttatttattgtagttagtggagta 43115888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 43730526 - 43730486
Alignment:
Q  90 tgtgttgatttcaatgataaaattaatattatttactaaat 130  Q
    ||||||||||| |||| |||||||||||| |||||||||||    
T  43730526 tgtgttgattttaatggtaaaattaatatcatttactaaat 43730486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 36006906 - 36006972
Alignment:
Q  89 ttgtgttgatttcaatgataaaattaatattatttact-aaata-ccccattaattgtagttagtgg 153  Q
    |||||||||||| ||||||||||||||||||||| ||| ||||| ||| ||||||||||||||||||    
T  36006906 ttgtgttgattttaatgataaaattaatattattgactaaaatatccctattaattgtagttagtgg 36006972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 7703173 - 7703215
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    ||||||||||||||||||| |||||||||||| ||||||||||    
T  7703173 aattgtgttgatttcaatggtaaaattaatatcatttactaaa 7703215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 44761511 - 44761583
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaatacccc--attaattgtagttagtggagta 157  Q
    ||||||||||||||||||| |||||||| ||  ||||||||||   |||  ||||||||||||||||||||||    
T  44761511 aattgtgttgatttcaatggtaaaattagtagcatttactaaaacacccttattaattgtagttagtggagta 44761583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 128
Target Start/End: Complemental strand, 5356696 - 5356657
Alignment:
Q  89 ttgtgttgatttcaatgataaaattaatattatttactaa 128  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  5356696 ttgtgttgattttaatgataaaattaatatcatttactaa 5356657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 32476381 - 32476322
Alignment:
Q  92 tgttgatttcaatgataaaattaatattatttact-aaataccc-cattaattgtagtta 149  Q
    ||||||||||||||||||||||||||| ||||| | ||||||||  ||||||||||||||    
T  32476381 tgttgatttcaatgataaaattaatatcatttattaaaatacccttattaattgtagtta 32476322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 7173013 - 7172971
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    |||||||||||||||||||||||||||| ||  ||||||||||    
T  7173013 aattgtgttgatttcaatgataaaattagtagcatttactaaa 7172971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 89 - 157
Target Start/End: Original strand, 10179966 - 10180036
Alignment:
Q  89 ttgtgttgatttcaatgataaaattaatattatttactaaa-tacccc-attaattgtagttagtggagta 157  Q
    |||| |||||||||||| |||||||| ||| |||||||||| ||| |  ||||||||||||||||||||||    
T  10179966 ttgtattgatttcaatggtaaaattagtataatttactaaaatacacttattaattgtagttagtggagta 10180036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 31331507 - 31331465
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    |||||| ||||||||||| ||||||||| ||||||||||||||    
T  31331507 aattgtattgatttcaattataaaattattattatttactaaa 31331465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 41092093 - 41092051
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    ||||||||||||||||||| |||||||||||| ||||| ||||    
T  41092093 aattgtgttgatttcaatggtaaaattaatatcatttattaaa 41092051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 155
Target Start/End: Original strand, 42972525 - 42972595
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttact-aaataccc-cattaattgtagttagtggag 155  Q
    |||||| |||||||||||| ||||||||||||  |||||| ||||||||  ||||||| ||||||||||||    
T  42972525 aattgttttgatttcaatggtaaaattaatatcgtttactaaaatacccttattaattatagttagtggag 42972595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 87 - 152
Target Start/End: Original strand, 1875609 - 1875676
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaatacccc--attaattgtagttagtg 152  Q
    ||||||||||||||||||| |||||||| ||  ||||||||||   |||  |||||||||||||||||    
T  1875609 aattgtgttgatttcaatggtaaaattagtagcatttactaaaacacccttattaattgtagttagtg 1875676  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 4428370 - 4428410
Alignment:
Q  89 ttgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    |||||||||||| ||||||||||||| ||| ||||||||||    
T  4428370 ttgtgttgattttaatgataaaattattatcatttactaaa 4428410  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 9550024 - 9549988
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattattt 123  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  9550024 aattgtgttgattttaatgataaaataaatattattt 9549988  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 10098008 - 10098080
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttacta-aatacccc-attaattgtagttagtggagta 157  Q
    |||||| |||||||  ||| |||||||||||| |||||||| || ||||  ||||||||||||||||||||||    
T  10098008 aattgtattgattttgatggtaaaattaatatcatttactataacacccttattaattgtagttagtggagta 10098080  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 157
Target Start/End: Complemental strand, 17824016 - 17823948
Alignment:
Q  91 gtgttgatttcaatgataaaattaatattatttacta-aatacc-ccattaattgtagttagtggagta 157  Q
    |||||||||||||||||||||||| |||  ||||||| ||||||   ||||||||||||||||| ||||    
T  17824016 gtgttgatttcaatgataaaattagtatcttttactagaatacctttattaattgtagttagtgaagta 17823948  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 31231829 - 31231757
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttact-aaatacccc-attaattgtagttagtggagta 157  Q
    |||||||| |||||  ||| |||||||||||| ||||||| ||| ||||  ||||||||||||||||||||||    
T  31231829 aattgtgtcgattttgatggtaaaattaatatcatttactgaaacacccttattaattgtagttagtggagta 31231757  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 39405861 - 39405821
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttacta 127  Q
    ||||||||| |||||||||||||||||| ||| ||||||||    
T  39405861 aattgtgttaatttcaatgataaaattagtatcatttacta 39405821  T

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Target: scaffold0583 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0583
Description:

Target: scaffold0583; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 2124 - 2082
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    ||||||||| |||||||||||||||||||||| ||||||||||    
T  2124 aattgtgttaatttcaatgataaaattaatatcatttactaaa 2082  T

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Target: scaffold1809 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 700 - 742
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    ||||||||||||||||||| |||||||||||  ||||||||||    
T  700 aattgtgttgatttcaatggtaaaattaatagcatttactaaa 742  T

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Target: scaffold0302 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 16197 - 16155
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    |||||||||||||| ||||||||||||||||  ||||||||||    
T  16197 aattgtgttgattttaatgataaaattaatagcatttactaaa 16155  T

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Target: scaffold0188 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 6836 - 6794
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaa 129  Q
    |||||| || |||||||||||||||||| ||||||||||||||    
T  6836 aattgttttaatttcaatgataaaattagtattatttactaaa 6794  T

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Target: scaffold0330 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 157
Target Start/End: Complemental strand, 5486 - 5417
Alignment:
Q  90 tgtgttgatttcaatgataaaattaatattatttactaaa-tacccc-attaattgtagttagtggagta 157  Q
    |||||||| ||||||| |||||||||||| |||||||||| || ||  ||||||| ||||||||||||||    
T  5486 tgtgttgaattcaatggtaaaattaatatcatttactaaaatatccttattaattttagttagtggagta 5417  T

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Target: scaffold0328 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 7997 - 8069
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttactaaatacccc--attaattgtagttagtggagta 157  Q
    |||| |||||||||  ||| ||||||||||||||||||| |||   |||  ||||||||||||||||||||||    
T  7997 aattttgttgatttggatggtaaaattaatattatttaccaaaacacccttattaattgtagttagtggagta 8069  T

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Target: scaffold0095 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 50303 - 50263
Alignment:
Q  87 aattgtgttgatttcaatgataaaattaatattatttacta 127  Q
    ||||||||| |||||||||||||||||| ||| ||||||||    
T  50303 aattgtgttaatttcaatgataaaattagtatcatttacta 50263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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