View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6643_high_3 (Length: 314)

Name: NF6643_high_3
Description: NF6643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6643_high_3
NF6643_high_3
[»] chr3 (4 HSPs)
chr3 (1-314)||(49321793-49322105)
chr3 (78-194)||(15267089-15267205)
chr3 (78-147)||(15086003-15086072)
chr3 (87-147)||(25810624-25810684)
[»] chr1 (2 HSPs)
chr1 (1-223)||(15741318-15741540)
chr1 (94-144)||(5424668-5424718)
[»] scaffold0758 (1 HSPs)
scaffold0758 (22-231)||(4758-4961)
[»] chr7 (5 HSPs)
chr7 (14-139)||(28592409-28592534)
chr7 (20-146)||(44895234-44895360)
chr7 (28-146)||(3126833-3126951)
chr7 (14-53)||(21924887-21924926)
chr7 (73-147)||(22851385-22851459)
[»] chr4 (3 HSPs)
chr4 (14-149)||(20135527-20135656)
chr4 (14-147)||(29540705-29540838)
chr4 (159-223)||(20133197-20133261)
[»] chr6 (5 HSPs)
chr6 (29-143)||(26590264-26590373)
chr6 (76-148)||(24207511-24207583)
chr6 (1-147)||(31140217-31140357)
chr6 (96-141)||(2576172-2576217)
chr6 (67-140)||(26260270-26260342)
[»] chr5 (2 HSPs)
chr5 (78-146)||(702900-702968)
chr5 (91-143)||(28096146-28096198)
[»] chr2 (1 HSPs)
chr2 (80-121)||(37740758-37740799)


Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 49322105 - 49321793
Alignment:
Q  1 tctatgatcgtaaatatcaaaaggaaggatgaagtggtcatcgatgcctacattgatatttgaggcatcaagaataatatcatggtcatcgatgagattg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49322105 tctatgatcgtaaatatcaaaaggaaggatgaagtggtcatcgatgcctacattgatatttgaggcatcaagaataatatcatggtcatcgatgagattg 49322006  T
Q  101 tcatcattcaaattttcattagaatgttcaagattatcttcttctactttcatcattgttttaagactcttctactcatttactaacaaatttaagttat 200  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49322005 tcatcattcaaattttcattagaatgttcaaggttatcttcttctactttcatcattgttttaagactcttctactcatttactaacaaatttaagttat 49321906  T
Q  201 cctttttgtgattttgttaattccaatgctcnnnnnnnnnnnnnnnnnnnnnnattagcagatgcatgtttttgcgaaaacattataccataacaataaa 300  Q
    ||||||||||||||||||||||| |||||||                      |||||||||||||||||||||||||||||||||||||||||||||||    
T  49321905 cctttttgtgattttgttaattctaatgctc-tttttttcttttcctttttttattagcagatgcatgtttttgcgaaaacattataccataacaataaa 49321807  T
Q  301 ttataactgggtca 314  Q
    ||||||||||||||    
T  49321806 ttataactgggtca 49321793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 78 - 194
Target Start/End: Original strand, 15267089 - 15267205
Alignment:
Q  78 tatcatggtcatcgatgagattgtcatcattcaaattttcattagaatgttcaagattatcttcttctactttcatcattgttttaagactcttctactc 177  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||   | |||| || ||  ||| |||||||||||    
T  15267089 tatcattgtcattgatgagattgtcatcattcaaattttcattagattgttcaagattgtcttcatctctatccatcgttattcgaaggctcttctactc 15267188  T
Q  178 atttactaacaaattta 194  Q
    |||||| ||||||||||    
T  15267189 atttacaaacaaattta 15267205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 147
Target Start/End: Original strand, 15086003 - 15086072
Alignment:
Q  78 tatcatggtcatcgatgagattgtcatcattcaaattttcattagaatgttcaagattatcttcttctac 147  Q
    |||||| ||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  15086003 tatcattgtcattgatgggattgtcatcattcaaattttcattagattgttcaagattatcttcatctac 15086072  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 25810684 - 25810624
Alignment:
Q  87 catcgatgagattgtcatcattcaaattttcattagaatgttcaagattatcttcttctac 147  Q
    |||| ||| |||| ||||| ||||||||||||||| | ||||||| || ||||||||||||    
T  25810684 catcaatgggattatcatctttcaaattttcattaaattgttcaaaatcatcttcttctac 25810624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 15741540 - 15741318
Alignment:
Q  1 tctatgatcgtaaatatcaaaaggaaggatgaagtggtcatcgatgcctacattgatatttgaggcatcaagaataatatcatggtcatcgatgagattg 100  Q
    |||| |||| || ||||| |||||| ||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| ||||  |||||||||    
T  15741540 tctaagatcatagatatctaaaggagggatgaagtagtcatcgatgcctaaattgacatttgaggcatcaagaataatatcatgatcattaatgagattg 15741441  T
Q  101 tcatcattcaaattttcattagaatgttcaagattatcttcttctactttcatcattgttttaagactcttctactcatttactaacaaatttaagttat 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||  |||||| ||||||| ||  |||||||||||||||||||| |    
T  15741440 tcatcattcaaattttcattagattgttcaagattatcttcttctacttccattattactttaagtctcttctccttgtttactaacaaatttaagttct 15741341  T
Q  201 cctttttgtgattttgttaattc 223  Q
     | ||||||||||||||||||||    
T  15741340 tccttttgtgattttgttaattc 15741318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 5424718 - 5424668
Alignment:
Q  94 gagattgtcatcattcaaattttcattagaatgttcaagattatcttcttc 144  Q
    |||||||| ||||||||||| ||||||||| |||||||||| |||||||||    
T  5424718 gagattgtaatcattcaaatgttcattagattgttcaagatcatcttcttc 5424668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0758 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 22 - 231
Target Start/End: Complemental strand, 4961 - 4758
Alignment:
Q  22 aggaaggatgaagtggtcatcgatgcctacattgatatttgaggcatcaagaataatatcatggtcatcgatgagattgtcatcattcaaattttcatta 121  Q
    |||| |||| ||||||||||| |||  |||||||| ||||||||||||||||| |||||||||||||      |||||||||||||| ||||||||||||    
T  4961 aggagggataaagtggtcatcaatgggtacattgacatttgaggcatcaagaacaatatcatggtca------agattgtcatcatttaaattttcatta 4868  T
Q  122 gaatgttcaagattatcttcttctactttcatcattgttttaagactcttctactcatttactaacaaatttaagttatcctttttgtgattttgttaat 221  Q
    || ||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||| |||||||||||||||| ||| ||  ||||||||||||||||||    
T  4867 gattgttcaagattatcttcttttacttccatcattattttaaggctcttctactcgtttactaacaaatttatgttctcacttttgtgattttgttaat 4768  T
Q  222 tccaatgctc 231  Q
    || |||||||    
T  4767 tctaatgctc 4758  T

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Target: chr7 (Bit Score: 74; Significance: 6e-34; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 14 - 139
Target Start/End: Original strand, 28592409 - 28592534
Alignment:
Q  14 atatcaaaaggaaggatgaagtggtcatcgatgcctacattgatatttgaggcatcaagaataatatcatggtcatcgatgagattgtcatcattcaaat 113  Q
    ||||| |||||| ||||||||||||||| ||| |||||||  |||||||| ||||||||||||||||||| ||||| ||||  |||||||||||||||||    
T  28592409 atatctaaaggatggatgaagtggtcattgatacctacatcaatatttgacgcatcaagaataatatcattgtcattgatggaattgtcatcattcaaat 28592508  T
Q  114 tttcattagaatgttcaagattatct 139  Q
    |||||||||| | |||||||||||||    
T  28592509 tttcattagatttttcaagattatct 28592534  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 44895360 - 44895234
Alignment:
Q  20 aaaggaaggatgaagtggtcatcgatgcctacattgatatttgaggcatcaagaataatatcatggtcatcgatgagattgtcatcattcaaattttcat 119  Q
    |||||||| |||||||||||||| |||||||||||  || |||| || || ||||   | || | ||||| ||||||||| |||||||||||| ||||||    
T  44895360 aaaggaagaatgaagtggtcatcaatgcctacattattacttgatgcgtcgagaacgttgtcgttgtcattgatgagattatcatcattcaaaatttcat 44895261  T
Q  120 tagaatgttcaagattatcttcttcta 146  Q
    || | ||||||||| |||||| |||||    
T  44895260 tatattgttcaagagtatctttttcta 44895234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 146
Target Start/End: Complemental strand, 3126951 - 3126833
Alignment:
Q  28 gatgaagtggtcatcgatgcctacattgatatttgaggcatcaagaataatatcatggtcatcgatgagattgtcatcattcaaattttcattagaatgt 127  Q
    ||||||||||||||||||||||||||  ||||||||  |||||| || | ||||||||||||       || ||||||| ||||||||| |||| | |||    
T  3126951 gatgaagtggtcatcgatgcctacatcaatatttgaaacatcaaaaacattatcatggtcatttcccgaatcgtcatcaatcaaatttttattaaattgt 3126852  T
Q  128 tcaagattatcttcttcta 146  Q
    | ||||||| |||||||||    
T  3126851 ttaagattaacttcttcta 3126833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 21924926 - 21924887
Alignment:
Q  14 atatcaaaaggaaggatgaagtggtcatcgatgcctacat 53  Q
    ||||| |||||| |||||||||||||||||||||||||||    
T  21924926 atatctaaaggagggatgaagtggtcatcgatgcctacat 21924887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 147
Target Start/End: Original strand, 22851385 - 22851459
Alignment:
Q  73 aataatatcatggtcatcgatgagattgtcatcattcaaattttcattagaatgttcaagattatcttcttctac 147  Q
    |||| |||||| ||||| |||| ||| |||||| || |||||||||||||| ||||| | ||||| |||||||||    
T  22851385 aatattatcattgtcattgatgggatcgtcatcttttaaattttcattagattgttcgacattattttcttctac 22851459  T

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Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 14 - 149
Target Start/End: Complemental strand, 20135656 - 20135527
Alignment:
Q  14 atatcaaaaggaaggatgaagtggtcatcgatgcctacattgatatttgaggcatcaagaataatatcatggtcatcgatgagattgtcatcattcaaat 113  Q
    ||||| |||||| ||||||||||||||||||| | |||||||| |||||||||||||     ||||||||||||||  |||| |||||||||||||||||    
T  20135656 atatctaaaggagggatgaagtggtcatcgatacatacattgacatttgaggcatca-----aatatcatggtcattaatgaaattgtcatcattcaaat 20135562  T
Q  114 tttcattagaatgttcaagattatcttcttctactt 149  Q
    ||| |||||| | ||||||||||||||||| |||||    
T  20135561 ttt-attagattcttcaagattatcttcttttactt 20135527  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 147
Target Start/End: Original strand, 29540705 - 29540838
Alignment:
Q  14 atatcaaaaggaaggatgaagtggtcatcgatgcctacattgatatttgaggcatcaagaataatatcatggtcatcgatgagattgtcatcattcaaat 113  Q
    ||||| |||||| |||||| ||||||||||||||||||||  | |||||| |||||||||| |||||| | ||||| |||| |||||||||| ||||| |    
T  29540705 atatctaaaggagggatgatgtggtcatcgatgcctacatcaacatttgatgcatcaagaacaatatcgtagtcatggatgggattgtcatcgttcaatt 29540804  T
Q  114 tttcattagaatgttcaagattatcttcttctac 147  Q
    |||||||||||| || || |||| ||| ||||||    
T  29540805 tttcattagaatatttaatattaactttttctac 29540838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 20133261 - 20133197
Alignment:
Q  159 ttttaagactcttctactcatttactaacaaatttaagttatcctttttgtgattttgttaattc 223  Q
    ||||||| ||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||    
T  20133261 ttttaagtctcttctacttgtttactaacaaatttaagttatcccttttgtgattttgttaattc 20133197  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 143
Target Start/End: Complemental strand, 26590373 - 26590264
Alignment:
Q  29 atgaagtggtcatcgatgcctacattgatatttgaggcatcaagaataatatcatggtcatcgatgagattgtcatcattcaaattttcattagaatgtt 128  Q
    |||||||||||||||||||||||||| | |||| |  ||||||||||| ||||||     | ||||||||| ||||||||| ||||||||||||| ||||    
T  26590373 atgaagtggtcatcgatgcctacattaacatttaacacatcaagaatattatcat-----ttgatgagattttcatcattccaattttcattagattgtt 26590279  T
Q  129 caagattatcttctt 143  Q
    |||||||||||||||    
T  26590278 caagattatcttctt 26590264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 24207583 - 24207511
Alignment:
Q  76 aatatcatggtcatcgatgagattgtcatcattcaaattttcattagaatgttcaagattatcttcttctact 148  Q
    |||||||||||| | ||||||||||||||| |||||||||| |||||| ||||||||| | ||||||| ||||    
T  24207583 aatatcatggtctttgatgagattgtcatcgttcaaatttttattagattgttcaagagtttcttcttttact 24207511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 31140357 - 31140217
Alignment:
Q  1 tctatgatcgtaaatatcaaaaggaaggatgaagtggtcatcgatgcctacattgatatttgaggcatcaagaataatatcatggtcatcgatgagattg 100  Q
    |||| |||| || ||||| ||||||  ||||||||||||||| ||||||||||| | ||| || |||| || || | |||||| |      || ||||||    
T  31140357 tctaggatcatagatatctaaaggatagatgaagtggtcatctatgcctacattaacattcgacgcattaaaaacattatcattg------ataagattg 31140264  T
Q  101 tcatcattcaaattttcattagaatgttcaagattatcttcttctac 147  Q
    ||||||||| |||||||||| || ||||| |||| ||||||||||||    
T  31140263 tcatcattccaattttcattggattgttcgagatcatcttcttctac 31140217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 141
Target Start/End: Original strand, 2576172 - 2576217
Alignment:
Q  96 gattgtcatcattcaaattttcattagaatgttcaagattatcttc 141  Q
    ||||| |||||||| ||||||||||||| |||||||||||||||||    
T  2576172 gattgccatcattccaattttcattagattgttcaagattatcttc 2576217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 140
Target Start/End: Complemental strand, 26260342 - 26260270
Alignment:
Q  67 atcaagaataatatcatggtcatcgatgagattgtcatcattcaaattttcattagaatgttcaagattatctt 140  Q
    |||||||| | ||||||  |||| |||||||||||||||||||||| ||| ||| || ||||| ||||||||||    
T  26260342 atcaagaacattatcattatcattgatgagattgtcatcattcaaaattttattcgattgttc-agattatctt 26260270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 702968 - 702900
Alignment:
Q  78 tatcatggtcatcgatgagattgtcatcattcaaattttcattagaatgttcaagattatcttcttcta 146  Q
    |||||| ||||| ||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||    
T  702968 tatcattgtcattgatgagattgtcatcattcgaattttcattagattgttcaagattattttcttcta 702900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 28096198 - 28096146
Alignment:
Q  91 gatgagattgtcatcattcaaattttcattagaatgttcaagattatcttctt 143  Q
    |||| |||||||||||||| ||||||||||||| |||||||||||||||||||    
T  28096198 gatgggattgtcatcattccaattttcattagattgttcaagattatcttctt 28096146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 37740758 - 37740799
Alignment:
Q  80 tcatggtcatcgatgagattgtcatcattcaaattttcatta 121  Q
    |||| ||||| |||| ||||||||||||||||||||||||||    
T  37740758 tcattgtcattgatgggattgtcatcattcaaattttcatta 37740799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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