View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6643_high_4 (Length: 273)
Name: NF6643_high_4
Description: NF6643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6643_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 45 - 254
Target Start/End: Original strand, 16165258 - 16165468
Alignment:
| Q |
45 |
aaggttgatgatttcggaagaaggtgacgaaatctccgaacaatcactgcatcatcctcactgtagttcaaaatgaaaaaagaataagctaaaagtagag |
144 |
Q |
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| T |
16165258 |
aaggttgatgattccggaagaaggtgacgaaatttccgaacaattactgcatcatcctcattgcagttcaaaatgaaaaaagaataagctaaaagtagag |
16165357 |
T |
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| Q |
145 |
atgtcaagagatgaccatattattaataaaaatacaataattt-aacaaaacaatatttacttactcaagatcatacacaagatcaggagcactcatttt |
243 |
Q |
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| T |
16165358 |
atgtcaagagatgaccatattattaataaaaatacaataatttaaacaaaacaatatttacttactcaagatcatacacaagattaggagcactcatttt |
16165457 |
T |
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| Q |
244 |
gacaaactatc |
254 |
Q |
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| T |
16165458 |
gacaaactatc |
16165468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 17050709 - 17050925
Alignment:
| Q |
1 |
aagttataagatgaagtaagttactcagttgataatcatcttcaaaggttgatgatttcggaagaaggtgacgaaatctccgaacaatcactgcatcatc |
100 |
Q |
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||||||||| ||||||||| |||||||||| || |||||||||||| || | || ||||||||||||| | |||| |||||||| | |||||||| |
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| T |
17050709 |
aagttataatatgaagtaatttactcagttcatcatcatcttcaaaagt---cgtttccggaagaaggtgaaaatatcttcgaacaataccagcatcatc |
17050805 |
T |
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| Q |
101 |
ctcactgtagttcaaaatga---aaaaagaataagctaaaagtagagatgtcaagagatgaccatattattaataaaaatacaataatttaacaaaacaa |
197 |
Q |
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| T |
17050806 |
ctcacttcaattccaaacgaaataaaaaaaataaagtaaaagttgagatgtaaaaagatgatcttattgttaataaatatacaattattt-agagaataa |
17050904 |
T |
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| Q |
198 |
tatttacttactcaagatcat |
218 |
Q |
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| T |
17050905 |
aatttacttactcaagatcat |
17050925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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