View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6643_high_7 (Length: 216)
Name: NF6643_high_7
Description: NF6643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6643_high_7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 12921449 - 12921651
Alignment:
| Q |
17 |
acccatttgaggttgtgggt---tatgctacacatttcctgaattggatactagtcccctatatacaataagcatttcatcaaacatataaccccaatta |
113 |
Q |
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| T |
12921449 |
acccatttgaggttgtgggtagttatgctacacatttcctgaattggatactagttccctatatacaataagcatttcatcaaacatataaccccaatta |
12921548 |
T |
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| Q |
114 |
tgtttaataattaagagattaaaaccatgtagtagaagcaaaaaattgtgtcccttcttgcnnnnnnncttctaatttcataacaaaactcccttttaca |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
12921549 |
tgtttaataattaagagattaaaaccatgtagtagaagcaaaaaattgtgtcccttcttgctttttttcttctaatttcataacaaagctcccttttaca |
12921648 |
T |
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| Q |
214 |
ctt |
216 |
Q |
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||| |
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| T |
12921649 |
ctt |
12921651 |
T |
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