View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6643_low_1 (Length: 693)
Name: NF6643_low_1
Description: NF6643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6643_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 211 - 564
Target Start/End: Complemental strand, 43232410 - 43232045
Alignment:
| Q |
211 |
ttataagactgcagctttaagaaggaaaaaggagaaataaaaacataacacaaacttataaataaacggtatgtatacaagaaaacaagggtgaaaataa |
310 |
Q |
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| T |
43232410 |
ttataagactgcagctttaagaaggaaaaaagagaaataaaaacataacacaaacttataaataaagggtatgtatacaacaaaacaagggtgaaaataa |
43232311 |
T |
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| Q |
311 |
atgaaacaaaccttacctctgaagaagttgtagtaaagaaggaaaataaagatggagagggttagataagagaga------------agacaaatcgagt |
398 |
Q |
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| T |
43232310 |
atgaaacaaaccttacctctgaagaagttgtagtaaagaaggaaaataaagatggagggggttagataagagagagggttttagagaagacaaaacgagt |
43232211 |
T |
|
| Q |
399 |
tgaagtggattaaaaatcaagtcaacctaaataagtatgtaataagggatcatgaaggcatttacacacacacaatagatttgaaattttgaattctaaa |
498 |
Q |
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| T |
43232210 |
tgaagtggattaaaaatcaagtcaacgtaaataagtatgtaataagggatcatgaaggcatttacacacacacaatagatttgaaattttgaattctgca |
43232111 |
T |
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| Q |
499 |
tcatcttccaagagaatcccaatttagctttctgtgtgtaacaaatatcaagtagaggtcttatat |
564 |
Q |
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| T |
43232110 |
tcatcttccaagagaatcccaatttagctttctgtgtgtaacaaatatcaagtagaggtctcatat |
43232045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 43233230 - 43233167
Alignment:
| Q |
19 |
tgacactgccaacttttcccactccttatactttgctctatttgaatcattgttttctccaaca |
82 |
Q |
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| T |
43233230 |
tgacactgccaacttttcccactccttatactttgctctatttgaatcattgttttctccaaca |
43233167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 560 - 609
Target Start/End: Complemental strand, 43232018 - 43231969
Alignment:
| Q |
560 |
tatatacaagtaagatgacccgtaaacataatatgatattatggttttgg |
609 |
Q |
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| T |
43232018 |
tatatacaagtaagatgacccataaacataatatgatattatggttttgg |
43231969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 146 - 189
Target Start/End: Complemental strand, 43233103 - 43233060
Alignment:
| Q |
146 |
gagtaatttaacaatgagattcaagctcaagaatatgaaaaact |
189 |
Q |
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| T |
43233103 |
gagtaatttaacaatgagattcaagctcaagaatatgaaaaact |
43233060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 31982633 - 31982589
Alignment:
| Q |
19 |
tgacactgccaacttttcccactccttatactttgctctatttga |
63 |
Q |
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| T |
31982633 |
tgacactgcctacttttcccactctttatacgttactctatttga |
31982589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 351
Target Start/End: Complemental strand, 29362302 - 29362170
Alignment:
| Q |
215 |
aagactgcagctttaagaaggaaaaaggagaaataaaaacataacacaaacttataaataaacggtatgtatacaagaaaacaagggtgaaaataaatga |
314 |
Q |
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|||| |||| |||| ||||||||||| ||||| | ||| | |||||||| ||||||||||| |||||| ||| ||||||||| |||| ||||||| |
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| T |
29362302 |
aagattgcaactttcagaaggaaaaaagagaagaataaagaaaacacaaagttataaataaagggtatgcata----aaaacaaggatgaagttaaatga |
29362207 |
T |
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| Q |
315 |
aacaaaccttacctctgaagaagttgtagtaaagaag |
351 |
Q |
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| T |
29362206 |
aacaaaactcacctaagaaaatgttgaagtaaagaag |
29362170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 8023588 - 8023544
Alignment:
| Q |
19 |
tgacactgccaacttttcccactccttatactttgctctatttga |
63 |
Q |
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|||||||||| ||||||||||||| |||||| || |||||||||| |
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| T |
8023588 |
tgacactgcctacttttcccactctttatacgttactctatttga |
8023544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 18646814 - 18646770
Alignment:
| Q |
19 |
tgacactgccaacttttcccactccttatactttgctctatttga |
63 |
Q |
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| T |
18646814 |
tgacactgcctacttttcccactctttatacgttactctatttga |
18646770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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