View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6645_high_1 (Length: 750)

Name: NF6645_high_1
Description: NF6645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6645_high_1
NF6645_high_1
[»] chr4 (10 HSPs)
chr4 (19-735)||(42769420-42770114)
chr4 (260-488)||(42743797-42744031)
chr4 (260-488)||(42753156-42753390)
chr4 (264-488)||(42762778-42763002)
chr4 (337-488)||(42717169-42717320)
chr4 (260-488)||(42734482-42734716)
chr4 (528-649)||(42717023-42717147)
chr4 (516-649)||(42734726-42734862)
chr4 (509-590)||(42762694-42762775)
chr4 (258-295)||(42717371-42717408)
[»] chr5 (2 HSPs)
chr5 (322-481)||(23040511-23040670)
chr5 (260-305)||(23040443-23040488)


Alignment Details
Target: chr4 (Bit Score: 634; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 634; E-Value: 0
Query Start/End: Original strand, 19 - 735
Target Start/End: Complemental strand, 42770114 - 42769420
Alignment:
Q  19 ctttagcgatgaaggagtgggtccagttccaaccagatggcgtggaatttgcgatgttgacatagataatactgataaatttaaatgcaacaggttaatc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42770114 ctttagcgatgaaggagtgggtccagttccaaccagatggcgtggaatttgcgatgttgacatagataatactgataaatttaaatgcaacaggttaatc 42770015  T
Q  119 ttgttatatactcgtatttatctaatgagcatctttttgttaaaagtaacacaatgttatgcttctgatacatatatagtttacacataatacctaattt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||                      |||||||||||||||||||||||||||||||    
T  42770014 ttgttatatactcgtatttatctaatgagcatctttttgttaaaagt----------------------acatatatagtttacacataatacctaattt 42769937  T
Q  219 ttcactctaactccattattatattatttgttcatgatatataggaagctaattggagcaagatatttttacaaaggctatttggcagatgctggtaaat 318  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42769936 ttcactctaactccatttttatattatttgttcatgatatataggaagctaattggagcaagatatttttacaaaggctatttggcagatgctggtaaat 42769837  T
Q  319 ccacaaatgtaacattccatagtgcacgcgactttgatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatt 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42769836 ccacaaatgtaacattccatagtgcacgcgactttgatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatt 42769737  T
Q  419 tggcaatggcctaggaacagcaagtggtggatcacctaacgcacgagttgcggcctataaggtatgttggccaccgcttgctgtaggcggtggatgctat 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42769736 tggcaatggcctaggaacagcaagtggtggatcacctaacgcacgagttgcggcctataaggtatgttggccaccgcttgctgtgggcggtggatgctat 42769637  T
Q  519 gaagcggacattttggctggtttcgaagctgccatacttgacggtgttgatgtgatttcggcgtctgtgggtggtgatcccgtagaattttatgaaagca 618  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42769636 gaagcagacattttggctggtttcgaagctgccatacttgacggtgttgatgtgatttcggcgtctgtgggtggtgatcccgtagaattttatgaaagca 42769537  T
Q  619 gtattgctatagggtctttccatgcagttgctaatggcattgttgtagttagttctgctggaaatacaggacctaaacccaaaactgcatccaacttgga 718  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42769536 gtattgctatagggtctttccatgcagttgctaatggcattgttgtagttagttctgctggaaatacaggacctaaacccaaaactgcatccaacttgga 42769437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 260 - 488
Target Start/End: Complemental strand, 42744031 - 42743797
Alignment:
Q  260 taggaagctaattggagcaagatatttttacaaaggctatttggcaga------tgctggtaaatccacaaatgtaacattccatagtgcacgcgacttt 353  Q
    ||||||||| |||||||||||||||||| ||||||||||| ||||||       | ||  || |  | |||||| ||||||| |||||||||| ||||||    
T  42744031 taggaagcttattggagcaagatattttaacaaaggctatctggcagtgccaattcctattagaaacccaaatgaaacattcaatagtgcacgtgacttt 42743932  T
Q  354 gatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcac 453  Q
    || |||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||    ||||||||||||||||||||||    
T  42743931 gaaggtcatggttcacatactttatcaactgctggaggaaatttcgttgccaatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcac 42743832  T
Q  454 ctaacgcacgagttgcggcctataaggtatgttgg 488  Q
    | || ||||||||||| ||||||||||| ||||||    
T  42743831 caaaagcacgagttgcagcctataaggtttgttgg 42743797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 260 - 488
Target Start/End: Complemental strand, 42753390 - 42753156
Alignment:
Q  260 taggaagctaattggagcaagatatttttacaaaggctatttggcaga------tgctggtaaatccacaaatgtaacattccatagtgcacgcgacttt 353  Q
    ||||||||| |||||||||||||||||| ||||||||||| ||||||       | ||  || |  | |||||| ||||||| |||||||||| ||||||    
T  42753390 taggaagcttattggagcaagatattttaacaaaggctatctggcagtgccaattcctattagaaacccaaatgaaacattcaatagtgcacgtgacttt 42753291  T
Q  354 gatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcac 453  Q
    || |||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||    ||||||||||||||||||||||    
T  42753290 gaaggtcatggttcacatactttatcaactgctggaggaaatttcgttgccaatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcac 42753191  T
Q  454 ctaacgcacgagttgcggcctataaggtatgttgg 488  Q
    | || ||||||||||| ||||||||||| ||||||    
T  42753190 caaaagcacgagttgcagcctataaggtttgttgg 42753156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 264 - 488
Target Start/End: Complemental strand, 42763002 - 42762778
Alignment:
Q  264 aagctaattggagcaagatatttttacaaaggctatttggcagatgctggtaaatccacaaatgtaacattccatagtgcacgcgactttgatggtcatg 363  Q
    ||||| |||||||||||||||||||  ||||||| | ||||| || ||  || | ||| ||||||| |  | ||||||||||| ||   ||| |||||||    
T  42763002 aagcttattggagcaagatatttttttaaaggctttctggcaaatccttatagagccaaaaatgtatcgcttcatagtgcacgggatagtgaaggtcatg 42762903  T
Q  364 gttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcacctaacgcacg 463  Q
    ||||||| ||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||    ||||||||||||||||||||||| || |||||    
T  42762902 gttcacacactttatcaactgctggaggaaatttcgttgctaatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacg 42762803  T
Q  464 agttgcggcctataaggtatgttgg 488  Q
    |||||| ||||||||||| ||||||    
T  42762802 agttgcagcctataaggtttgttgg 42762778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 337 - 488
Target Start/End: Complemental strand, 42717320 - 42717169
Alignment:
Q  337 atagtgcacgcgactttgatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaac 436  Q
    |||||||||| ||| |||||||||||||| |||||||||||||||| || ||||||||||||||||| |||||||||||||||||| |||||   |||||    
T  42717320 atagtgcacgtgacattgatggtcatggtacacatactttatcaactgccggaggaaattttgttgctaatgcaagtgtatttggctatggcaatggaac 42717221  T
Q  437 agcaagtggtggatcacctaacgcacgagttgcggcctataaggtatgttgg 488  Q
    ||||||||||||||| || || ||||||||||  ||||||||||| ||||||    
T  42717220 agcaagtggtggatcgccaaaagcacgagttgtagcctataaggtttgttgg 42717169  T

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Target: chr4; HSP #6
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 260 - 488
Target Start/End: Original strand, 42734482 - 42734716
Alignment:
Q  260 taggaagctaattggagcaagatatttttacaaaggctatttggcaga------tgctggtaaatccacaaatgtaacattccatagtgcacgcgacttt 353  Q
    ||||||||| ||||| |||||||||||||||||||||||| ||||||       | ||  || |  | |||||| ||||||| ||||||| || |||  |    
T  42734482 taggaagcttattggcgcaagatatttttacaaaggctatatggcagtgccaattcctattagaaacccaaatgaaacattcaatagtgcccgtgacagt 42734581  T
Q  354 gatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcac 453  Q
    |  |||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||| ||||    |||||||||||||||||||| |    
T  42734582 gtaggtcatggttcacatactttatcaactgctggaggaaattttgttgctaatgcaagtgtatttggctatggaaatggaacagcaagtggtggatcgc 42734681  T
Q  454 ctaacgcacgagttgcggcctataaggtatgttgg 488  Q
    | || ||||||||| | ||||||||||| ||||||    
T  42734682 caaaagcacgagtttccgcctataaggtttgttgg 42734716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 528 - 649
Target Start/End: Complemental strand, 42717147 - 42717023
Alignment:
Q  528 attttggctggtttcgaagctgccatacttgacggtgttgatgtgatttcggcgtctgtgggtggtgat---cccgtagaattttatgaaagcagtattg 624  Q
    |||||||||||||| ||||||||||||  ||| ||||| || ||| |||| | |||| |||||||||||   || || |||||||| || |||||||||     
T  42717147 attttggctggttttgaagctgccataagtgatggtgtcgacgtgctttcagtgtctttgggtggtgattttcctgttgaattttacgatagcagtattt 42717048  T
Q  625 ctatagggtctttccatgcagttgc 649  Q
    | |||||||||||||||||||||||    
T  42717047 ccatagggtctttccatgcagttgc 42717023  T

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Target: chr4; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 516 - 649
Target Start/End: Original strand, 42734726 - 42734862
Alignment:
Q  516 tatgaagcggacattttggctggtttcgaagctgccatacttgacggtgttgatgtgatttcggcgtctgtgggtggtga---tcccgtagaattttatg 612  Q
    ||||| || || |||||||||||||| ||||||||||||  ||| |||||||||||| |||| | |||| || |||||||   ||| || |||||| | |    
T  42734726 tatgatgcagatattttggctggttttgaagctgccataagtgatggtgttgatgtgctttcagtgtctttgagtggtgattttcctgttgaatttcacg 42734825  T
Q  613 aaagcagtattgctatagggtctttccatgcagttgc 649  Q
    | ||||||||| | |||||||||||||||||||||||    
T  42734826 atagcagtatttccatagggtctttccatgcagttgc 42734862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 509 - 590
Target Start/End: Complemental strand, 42762775 - 42762694
Alignment:
Q  509 tggatgctatgaagcggacattttggctggtttcgaagctgccatacttgacggtgttgatgtgatttcggcgtctgtgggt 590  Q
    |||||| ||||| || ||||||||||||||||| ||||||||||||  ||| |||||||||||| |||||| |||| |||||    
T  42762775 tggatgttatgatgcagacattttggctggttttgaagctgccataagtgatggtgttgatgtgctttcggtgtctttgggt 42762694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 258 - 295
Target Start/End: Complemental strand, 42717408 - 42717371
Alignment:
Q  258 tataggaagctaattggagcaagatatttttacaaagg 295  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  42717408 tataggaagcttattggagcaagatatttttacaaagg 42717371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 2e-51; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 322 - 481
Target Start/End: Original strand, 23040511 - 23040670
Alignment:
Q  322 caaatgtaacattccatagtgcacgcgactttgatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttgg 421  Q
    |||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |  ||||||||||| ||||| ||||| |||||||||||    
T  23040511 caaatgaaacattcaatagtgcacgtgactttgatggtcatggttcacatactttatcaactgttggaggaaatttcgttgctaatgcgagtgtatttgg 23040610  T
Q  422 caatggcctaggaacagcaagtggtggatcacctaacgcacgagttgcggcctataaggt 481  Q
    |||||||| |||||||||||||||||||||||| || || |||||||| |||||||||||    
T  23040611 caatggccgaggaacagcaagtggtggatcaccaaaagctcgagttgcagcctataaggt 23040670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 260 - 305
Target Start/End: Original strand, 23040443 - 23040488
Alignment:
Q  260 taggaagctaattggagcaagatatttttacaaaggctatttggca 305  Q
    ||||||||| |||||||||||||||||| ||||||||||| |||||    
T  23040443 taggaagcttattggagcaagatattttaacaaaggctatctggca 23040488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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