View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6645_high_2 (Length: 489)
Name: NF6645_high_2
Description: NF6645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6645_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 19 - 471
Target Start/End: Original strand, 4750866 - 4751319
Alignment:
| Q |
19 |
cttagagtgtaagtttagtagtaaaattaaagtttgattttgaaaccatttctaactttgtgtatagccaatcaaagagcgtgtgaaagaaatattacgt |
118 |
Q |
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| T |
4750866 |
cttagagtgtaagtttagtagtaaaattaaagtttgattttgaaaccatttctaactttgtgtatagccaatgaaagagcgtgtgaaagaaatattacgt |
4750965 |
T |
|
| Q |
119 |
taaggagaaaaaggaaggnnnnnnnnnc-aataaaacaacaaaatacacatttgtatagatgatattatatttagggacaaacactttattttgtaaatg |
217 |
Q |
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| T |
4750966 |
taaggagaaaaaggaaggaaaaaaaaaagaataaaacaacaaaatacacatttatatagatgatattatatttagggacaaacactttattttgtaaatg |
4751065 |
T |
|
| Q |
218 |
atattgtaagtagagaggaagggaatacgttccatgcttgccaagaaagtttaaaggacaaattatttaaattaaagtgtgtgaatggtcataaacgtaa |
317 |
Q |
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| T |
4751066 |
atattgtaattagagaggaagggaatacgttctatgcttgccaagaaagtttaaaggacaaattatttaaattaaagtgtgcgaatggtcataaacgtaa |
4751165 |
T |
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| Q |
318 |
caacattataaaataaacattgttatgacatgcaaatcaaattttaggtttaagagcaaataaaattcctccctccgtctcattttaatggtcgttttag |
417 |
Q |
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| T |
4751166 |
taacattataaaataaaaattgttatgacatgcaaattaaattttaggcttaagagcaaataaaattcctccctccgtctcattttaatggtcgttttag |
4751265 |
T |
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| Q |
418 |
agttgtgtgcgattattaaggaaattttagttgagttaatttcaatggtaatat |
471 |
Q |
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| T |
4751266 |
agttgtgtgcgattattaaggaaattttagttgagtttatttcaatggtaatat |
4751319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 147 - 300
Target Start/End: Original strand, 4744229 - 4744377
Alignment:
| Q |
147 |
aataaaacaacaaaatacacattt-gtatagatgatattatatttagggacaaacactttattttgtaaatgatattgtaagtagagaggaagggaatac |
245 |
Q |
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| T |
4744229 |
aataaaacaacaaaatacacatttagtatagatgat-------ttagggacaaaaactttattctttaaataatcttacaattagagacgaatggaatac |
4744321 |
T |
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| Q |
246 |
gttccatgcttgccaagaaagtttaaaggacaa-attatttaaattaaagtgtgtg |
300 |
Q |
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| T |
4744322 |
tttctatgcttgtcaaggaagttcaaaggacaacattatttaaactaaagtgtgtg |
4744377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 334
Target Start/End: Original strand, 4730511 - 4730595
Alignment:
| Q |
251 |
atgcttgccaagaaagtttaaaggacaa-attatttaaattaaagtgtgtgaatggtcataaacgtaacaacattataaaataaa |
334 |
Q |
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| T |
4730511 |
atgcatgcctaggaagttcaaaggacaacattatttaaattaaagtgtgagacaagtcataaacgtaacaacattataaaataaa |
4730595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 384
Target Start/End: Original strand, 4734297 - 4734414
Alignment:
| Q |
264 |
aagtttaaaggacaa-attatttaaattaaagtgtgtgaatggtcataaacgtaacaacattataaaataaacattgttatgacatgcaaatcaaatttt |
362 |
Q |
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||||| ||||||||| |||||||||||||||||| | || |||||||||||||||||||||||||||||| || |||| | |||| || ||||||| |
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| T |
4734297 |
aagttcaaaggacaacattatttaaattaaagtgagacaaa--tcataaacgtaacaacattataaaataaac--tgatatgtcgtgcacataaaatttt |
4734392 |
T |
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| Q |
363 |
aggtttaagagcaaataaaatt |
384 |
Q |
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| T |
4734393 |
atgtttaaaaggaaataaaatt |
4734414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 357 - 442
Target Start/End: Original strand, 4744668 - 4744753
Alignment:
| Q |
357 |
aattttaggtttaagagcaaataaaattcctccctccgtctcattttaatggtcgttttagagttgtgtgcgattattaaggaaat |
442 |
Q |
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| T |
4744668 |
aatttcaggcttaagagcaaataaaattgttttttccgtctcattttaatagtcgttatagagttgtgtgcggttatcaaagaaat |
4744753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 4744144 - 4744216
Alignment:
| Q |
19 |
cttagagtgtaagtttagtagtaaaattaaagtttgattttgaaaccatttctaac--tttgtgtatagccaatcaaa |
94 |
Q |
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| T |
4744144 |
cttagagtgtaagttaagtagtaaaa-----gtttgattttgaaaccaattctaactttttgggtatagccaatcaaa |
4744216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 424
Target Start/End: Original strand, 37988879 - 37988920
Alignment:
| Q |
383 |
ttcctccctccgtctcattttaatggtcgttttagagttgtg |
424 |
Q |
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| T |
37988879 |
ttcctccattcgtctcattttaatagtcgttttagagttgtg |
37988920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 172 - 205
Target Start/End: Original strand, 30856233 - 30856266
Alignment:
| Q |
172 |
tatagatgatattatatttagggacaaacacttt |
205 |
Q |
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| T |
30856233 |
tatagatgatattatatttagggacaaacacttt |
30856266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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