View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6645_high_9 (Length: 307)
Name: NF6645_high_9
Description: NF6645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6645_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 138; Significance: 4e-72; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 2 - 163
Target Start/End: Original strand, 9069431 - 9069592
Alignment:
| Q |
2 |
aaatatattaaataaagataattgaaaggtagagaattcagataccatataatggtggccaatgtaaccttttggatccttaaaattaatataaatgata |
101 |
Q |
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| T |
9069431 |
aaatatattaaatacagatgattgaaaggtagagaattcagatcccatataatggtggccaatgtaaccttttagatccttaaaattaatataaatgata |
9069530 |
T |
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| Q |
102 |
aacaaacacaaatttgttcacacaaatacaacaccgtatatgtactgttcataaatactcca |
163 |
Q |
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| T |
9069531 |
aacaaacacaaatttgttgacacaaatacaactccgtatatgtactgttcataaatactcca |
9069592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 219 - 298
Target Start/End: Original strand, 9069648 - 9069727
Alignment:
| Q |
219 |
tcattcacgaccacctcccttttttatgcaactccgatctccggccatcgtccaccgttatcaactccactatcctatgc |
298 |
Q |
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| T |
9069648 |
tcattcacgaccacctcccttttttctgcaactccgatctccagccatcgtccaccgttatcaactccactatcctatgc |
9069727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 130
Target Start/End: Original strand, 8446005 - 8446041
Alignment:
| Q |
94 |
aaatgataaacaaacacaaatttgttcacacaaatac |
130 |
Q |
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| T |
8446005 |
aaatgataaacaaacacaaattttttgacacaaatac |
8446041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 130
Target Start/End: Original strand, 8454809 - 8454845
Alignment:
| Q |
94 |
aaatgataaacaaacacaaatttgttcacacaaatac |
130 |
Q |
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| T |
8454809 |
aaatgataaacaaacacaaattttttgacacaaatac |
8454845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 45716305 - 45716264
Alignment:
| Q |
94 |
aaatgataaacaaacacaaatttgttcacacaaatacaacac |
135 |
Q |
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| T |
45716305 |
aaatgataaacaaacacaaattatttgacacaaatacaacac |
45716264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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