View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6645_low_1 (Length: 750)
Name: NF6645_low_1
Description: NF6645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6645_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 634; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 634; E-Value: 0
Query Start/End: Original strand, 19 - 735
Target Start/End: Complemental strand, 42770114 - 42769420
Alignment:
| Q |
19 |
ctttagcgatgaaggagtgggtccagttccaaccagatggcgtggaatttgcgatgttgacatagataatactgataaatttaaatgcaacaggttaatc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42770114 |
ctttagcgatgaaggagtgggtccagttccaaccagatggcgtggaatttgcgatgttgacatagataatactgataaatttaaatgcaacaggttaatc |
42770015 |
T |
|
| Q |
119 |
ttgttatatactcgtatttatctaatgagcatctttttgttaaaagtaacacaatgttatgcttctgatacatatatagtttacacataatacctaattt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
42770014 |
ttgttatatactcgtatttatctaatgagcatctttttgttaaaagt----------------------acatatatagtttacacataatacctaattt |
42769937 |
T |
|
| Q |
219 |
ttcactctaactccattattatattatttgttcatgatatataggaagctaattggagcaagatatttttacaaaggctatttggcagatgctggtaaat |
318 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42769936 |
ttcactctaactccatttttatattatttgttcatgatatataggaagctaattggagcaagatatttttacaaaggctatttggcagatgctggtaaat |
42769837 |
T |
|
| Q |
319 |
ccacaaatgtaacattccatagtgcacgcgactttgatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42769836 |
ccacaaatgtaacattccatagtgcacgcgactttgatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatt |
42769737 |
T |
|
| Q |
419 |
tggcaatggcctaggaacagcaagtggtggatcacctaacgcacgagttgcggcctataaggtatgttggccaccgcttgctgtaggcggtggatgctat |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
42769736 |
tggcaatggcctaggaacagcaagtggtggatcacctaacgcacgagttgcggcctataaggtatgttggccaccgcttgctgtgggcggtggatgctat |
42769637 |
T |
|
| Q |
519 |
gaagcggacattttggctggtttcgaagctgccatacttgacggtgttgatgtgatttcggcgtctgtgggtggtgatcccgtagaattttatgaaagca |
618 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42769636 |
gaagcagacattttggctggtttcgaagctgccatacttgacggtgttgatgtgatttcggcgtctgtgggtggtgatcccgtagaattttatgaaagca |
42769537 |
T |
|
| Q |
619 |
gtattgctatagggtctttccatgcagttgctaatggcattgttgtagttagttctgctggaaatacaggacctaaacccaaaactgcatccaacttgga |
718 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42769536 |
gtattgctatagggtctttccatgcagttgctaatggcattgttgtagttagttctgctggaaatacaggacctaaacccaaaactgcatccaacttgga |
42769437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 260 - 488
Target Start/End: Complemental strand, 42744031 - 42743797
Alignment:
| Q |
260 |
taggaagctaattggagcaagatatttttacaaaggctatttggcaga------tgctggtaaatccacaaatgtaacattccatagtgcacgcgacttt |
353 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||| |||||| | || || | | |||||| ||||||| |||||||||| |||||| |
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|
| T |
42744031 |
taggaagcttattggagcaagatattttaacaaaggctatctggcagtgccaattcctattagaaacccaaatgaaacattcaatagtgcacgtgacttt |
42743932 |
T |
|
| Q |
354 |
gatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcac |
453 |
Q |
| |
|
|| |||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
42743931 |
gaaggtcatggttcacatactttatcaactgctggaggaaatttcgttgccaatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcac |
42743832 |
T |
|
| Q |
454 |
ctaacgcacgagttgcggcctataaggtatgttgg |
488 |
Q |
| |
|
| || ||||||||||| ||||||||||| |||||| |
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|
| T |
42743831 |
caaaagcacgagttgcagcctataaggtttgttgg |
42743797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 260 - 488
Target Start/End: Complemental strand, 42753390 - 42753156
Alignment:
| Q |
260 |
taggaagctaattggagcaagatatttttacaaaggctatttggcaga------tgctggtaaatccacaaatgtaacattccatagtgcacgcgacttt |
353 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||| |||||| | || || | | |||||| ||||||| |||||||||| |||||| |
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|
| T |
42753390 |
taggaagcttattggagcaagatattttaacaaaggctatctggcagtgccaattcctattagaaacccaaatgaaacattcaatagtgcacgtgacttt |
42753291 |
T |
|
| Q |
354 |
gatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcac |
453 |
Q |
| |
|
|| |||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
42753290 |
gaaggtcatggttcacatactttatcaactgctggaggaaatttcgttgccaatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcac |
42753191 |
T |
|
| Q |
454 |
ctaacgcacgagttgcggcctataaggtatgttgg |
488 |
Q |
| |
|
| || ||||||||||| ||||||||||| |||||| |
|
|
| T |
42753190 |
caaaagcacgagttgcagcctataaggtttgttgg |
42753156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 264 - 488
Target Start/End: Complemental strand, 42763002 - 42762778
Alignment:
| Q |
264 |
aagctaattggagcaagatatttttacaaaggctatttggcagatgctggtaaatccacaaatgtaacattccatagtgcacgcgactttgatggtcatg |
363 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||| | ||||| || || || | ||| ||||||| | | ||||||||||| || ||| ||||||| |
|
|
| T |
42763002 |
aagcttattggagcaagatatttttttaaaggctttctggcaaatccttatagagccaaaaatgtatcgcttcatagtgcacgggatagtgaaggtcatg |
42762903 |
T |
|
| Q |
364 |
gttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcacctaacgcacg |
463 |
Q |
| |
|
||||||| ||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| |
|
|
| T |
42762902 |
gttcacacactttatcaactgctggaggaaatttcgttgctaatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacg |
42762803 |
T |
|
| Q |
464 |
agttgcggcctataaggtatgttgg |
488 |
Q |
| |
|
|||||| ||||||||||| |||||| |
|
|
| T |
42762802 |
agttgcagcctataaggtttgttgg |
42762778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 337 - 488
Target Start/End: Complemental strand, 42717320 - 42717169
Alignment:
| Q |
337 |
atagtgcacgcgactttgatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaac |
436 |
Q |
| |
|
|||||||||| ||| |||||||||||||| |||||||||||||||| || ||||||||||||||||| |||||||||||||||||| ||||| ||||| |
|
|
| T |
42717320 |
atagtgcacgtgacattgatggtcatggtacacatactttatcaactgccggaggaaattttgttgctaatgcaagtgtatttggctatggcaatggaac |
42717221 |
T |
|
| Q |
437 |
agcaagtggtggatcacctaacgcacgagttgcggcctataaggtatgttgg |
488 |
Q |
| |
|
||||||||||||||| || || |||||||||| ||||||||||| |||||| |
|
|
| T |
42717220 |
agcaagtggtggatcgccaaaagcacgagttgtagcctataaggtttgttgg |
42717169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 260 - 488
Target Start/End: Original strand, 42734482 - 42734716
Alignment:
| Q |
260 |
taggaagctaattggagcaagatatttttacaaaggctatttggcaga------tgctggtaaatccacaaatgtaacattccatagtgcacgcgacttt |
353 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||| |||||| | || || | | |||||| ||||||| ||||||| || ||| | |
|
|
| T |
42734482 |
taggaagcttattggcgcaagatatttttacaaaggctatatggcagtgccaattcctattagaaacccaaatgaaacattcaatagtgcccgtgacagt |
42734581 |
T |
|
| Q |
354 |
gatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcac |
453 |
Q |
| |
|
| |||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||| | |
|
|
| T |
42734582 |
gtaggtcatggttcacatactttatcaactgctggaggaaattttgttgctaatgcaagtgtatttggctatggaaatggaacagcaagtggtggatcgc |
42734681 |
T |
|
| Q |
454 |
ctaacgcacgagttgcggcctataaggtatgttgg |
488 |
Q |
| |
|
| || ||||||||| | ||||||||||| |||||| |
|
|
| T |
42734682 |
caaaagcacgagtttccgcctataaggtttgttgg |
42734716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 528 - 649
Target Start/End: Complemental strand, 42717147 - 42717023
Alignment:
| Q |
528 |
attttggctggtttcgaagctgccatacttgacggtgttgatgtgatttcggcgtctgtgggtggtgat---cccgtagaattttatgaaagcagtattg |
624 |
Q |
| |
|
|||||||||||||| |||||||||||| ||| ||||| || ||| |||| | |||| ||||||||||| || || |||||||| || ||||||||| |
|
|
| T |
42717147 |
attttggctggttttgaagctgccataagtgatggtgtcgacgtgctttcagtgtctttgggtggtgattttcctgttgaattttacgatagcagtattt |
42717048 |
T |
|
| Q |
625 |
ctatagggtctttccatgcagttgc |
649 |
Q |
| |
|
| ||||||||||||||||||||||| |
|
|
| T |
42717047 |
ccatagggtctttccatgcagttgc |
42717023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 516 - 649
Target Start/End: Original strand, 42734726 - 42734862
Alignment:
| Q |
516 |
tatgaagcggacattttggctggtttcgaagctgccatacttgacggtgttgatgtgatttcggcgtctgtgggtggtga---tcccgtagaattttatg |
612 |
Q |
| |
|
||||| || || |||||||||||||| |||||||||||| ||| |||||||||||| |||| | |||| || ||||||| ||| || |||||| | | |
|
|
| T |
42734726 |
tatgatgcagatattttggctggttttgaagctgccataagtgatggtgttgatgtgctttcagtgtctttgagtggtgattttcctgttgaatttcacg |
42734825 |
T |
|
| Q |
613 |
aaagcagtattgctatagggtctttccatgcagttgc |
649 |
Q |
| |
|
| ||||||||| | ||||||||||||||||||||||| |
|
|
| T |
42734826 |
atagcagtatttccatagggtctttccatgcagttgc |
42734862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 509 - 590
Target Start/End: Complemental strand, 42762775 - 42762694
Alignment:
| Q |
509 |
tggatgctatgaagcggacattttggctggtttcgaagctgccatacttgacggtgttgatgtgatttcggcgtctgtgggt |
590 |
Q |
| |
|
|||||| ||||| || ||||||||||||||||| |||||||||||| ||| |||||||||||| |||||| |||| ||||| |
|
|
| T |
42762775 |
tggatgttatgatgcagacattttggctggttttgaagctgccataagtgatggtgttgatgtgctttcggtgtctttgggt |
42762694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 258 - 295
Target Start/End: Complemental strand, 42717408 - 42717371
Alignment:
| Q |
258 |
tataggaagctaattggagcaagatatttttacaaagg |
295 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42717408 |
tataggaagcttattggagcaagatatttttacaaagg |
42717371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 2e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 322 - 481
Target Start/End: Original strand, 23040511 - 23040670
Alignment:
| Q |
322 |
caaatgtaacattccatagtgcacgcgactttgatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttgg |
421 |
Q |
| |
|
|||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||| ||||| ||||| ||||||||||| |
|
|
| T |
23040511 |
caaatgaaacattcaatagtgcacgtgactttgatggtcatggttcacatactttatcaactgttggaggaaatttcgttgctaatgcgagtgtatttgg |
23040610 |
T |
|
| Q |
422 |
caatggcctaggaacagcaagtggtggatcacctaacgcacgagttgcggcctataaggt |
481 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| || || |||||||| ||||||||||| |
|
|
| T |
23040611 |
caatggccgaggaacagcaagtggtggatcaccaaaagctcgagttgcagcctataaggt |
23040670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 260 - 305
Target Start/End: Original strand, 23040443 - 23040488
Alignment:
| Q |
260 |
taggaagctaattggagcaagatatttttacaaaggctatttggca |
305 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
23040443 |
taggaagcttattggagcaagatattttaacaaaggctatctggca |
23040488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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