View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6645_low_13 (Length: 257)
Name: NF6645_low_13
Description: NF6645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6645_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 10 - 239
Target Start/End: Complemental strand, 49520177 - 49519948
Alignment:
| Q |
10 |
attatactgtgatgatgcattagatgaaagtgtaaatactcaccttttgcgatatcctgttgaagtgggtgaagatggaagtgtgacatcactttcaggg |
109 |
Q |
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| T |
49520177 |
attatactgtgatgatgcattagatgaaagtgtaaatactcaccttttgcgatatcctgttgaagtgggtgaagatggaagtgtaacatcactttcaggg |
49520078 |
T |
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| Q |
110 |
atgcaatattttcctgatacaatggctttgattcttggttcaaaatctgattaccttcctcccatacttaccacctagctagctagcacaaggcttgacg |
209 |
Q |
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| T |
49520077 |
atgcaatattttcctgatacaatggctttgattcttggttcaaaatctgattaccttcctcccatacttaccacctagctagctagcacaaggcttgacg |
49519978 |
T |
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| Q |
210 |
gccaatacatgttatgcgtatgttcattca |
239 |
Q |
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| T |
49519977 |
gccaatacatgttatacgtatgttcattca |
49519948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 186
Target Start/End: Complemental strand, 49508797 - 49508729
Alignment:
| Q |
118 |
ttttcctgatacaatggctttgattcttggttcaaaatctgattaccttcctcccatacttaccaccta |
186 |
Q |
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| T |
49508797 |
ttttcctgatactaaggctaagattctaggttccaaatctgagtaccttcctccaattctcaccaccta |
49508729 |
T |
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