View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6645_low_3 (Length: 453)
Name: NF6645_low_3
Description: NF6645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6645_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 16 - 444
Target Start/End: Original strand, 39298424 - 39298838
Alignment:
| Q |
16 |
cttctcttgataattagtaccttgtgcttgagttctttccccagttggcatcattttttgagaatagttgctcacattttcgccgatacctccggatgat |
115 |
Q |
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| T |
39298424 |
cttctcttgataattagtaccttgtgcttgagttctttccccagttggcatcattttttgagaatagttgctcacattttcgccgatacctcctgatgat |
39298523 |
T |
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| Q |
116 |
ggcatgatctcttcaccttcctaaaatcaaaccaaaattttcagtgtattcagtcattatcaagtatcatgtcatttataccagttgaatcaaacttaac |
215 |
Q |
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| T |
39298524 |
ggcatgatctcttcaccttcctaaaatca--------------gtgtattcagtcattatcaagtatcatgtcatttataccagttgaatcaaacttaat |
39298609 |
T |
|
| Q |
216 |
taaacatttgattatgaaaagtaaacatgatgataaaaaagaaatagtctaataaaagtgatgaatgtatagaacagaacctgaagttgaccagaagccc |
315 |
Q |
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| T |
39298610 |
taaacatttgattatgaaaagtaaacatgatgataaaaaagaaatagtctaataaaagtgatgaatgtatagaacagaacctgaagttgaccagaagccc |
39298709 |
T |
|
| Q |
316 |
ttttagtctcatagtcacgccatgattcatctttcttcttagcagtaaactccttagcagtctcgccagcagaagcagccaaacctttcacaacatccac |
415 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39298710 |
ttttagtctcatattcacgccatgattcatctttcttcttagcagtaaactccttagcagtctcaccagcagaagcagccaaacctttcacaacatccac |
39298809 |
T |
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| Q |
416 |
cgatttcgacgcaagctcggccgcctttg |
444 |
Q |
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| T |
39298810 |
cgatttcaacgcaagcccggccgcctttg |
39298838 |
T |
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