View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6645_low_4 (Length: 444)
Name: NF6645_low_4
Description: NF6645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6645_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 10 - 287
Target Start/End: Original strand, 46759353 - 46759623
Alignment:
| Q |
10 |
catcatcagtttcaaaatacatgtcaatggagtatgatgtagtatattaaaaaattaaaactctaaccatgaggattagatcaatggagattcagttatg |
109 |
Q |
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| T |
46759353 |
catcatcagttttaaaatacatgtcaatggagtatgatgtagtatattaaaaaattaaaactctaa------ggattagatcaatggagattcagttatg |
46759446 |
T |
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| Q |
110 |
ataaggaaagttttaggcatggcaatttactttagtcaaaaaaggaatagtccaaacttgggagccaaacccaaaaggtagttttgttttggaaattggg |
209 |
Q |
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| T |
46759447 |
ataaggaaagttttaggcatggcaatttactttagtcaaaaaaggaatagtccaaacttgggagccaaacccaaaaggtagttttgttttggaaattggg |
46759546 |
T |
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| Q |
210 |
atattcttttcaagagaggcatgtatgtattattggacacctaggaattcaaaggtaatacgggcggcgcttgagact |
287 |
Q |
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| T |
46759547 |
-tattcttttcaagagaggcatgtatgtattattggacacctaggaattcaaaggtaatacgggcggcgcttgagact |
46759623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 326 - 427
Target Start/End: Original strand, 46759657 - 46759758
Alignment:
| Q |
326 |
tatcccaacctcctagtgatggaagctattaataatgaataaaagaaaatcttaaccccaaagtctaaactctaaacatacttagcatttagcaacataa |
425 |
Q |
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| T |
46759657 |
tatcccaacctcctagtgatggaagctattaataatgaataaaagaaaatcttaaccccaaagtctaaactctaaacatacttagcatttagcaacataa |
46759756 |
T |
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| Q |
426 |
aa |
427 |
Q |
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|| |
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| T |
46759757 |
aa |
46759758 |
T |
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