View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6645_low_6 (Length: 420)
Name: NF6645_low_6
Description: NF6645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6645_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 18 - 406
Target Start/End: Original strand, 39297961 - 39298349
Alignment:
| Q |
18 |
atatccatgtaatttagaaaacattctttgatgctggatggccttcatgtttggcacgaccacttgagtgagactctgacccaatattcttccttgactc |
117 |
Q |
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| T |
39297961 |
atatccatggaatttagaaaacattctttgatgctggatggccttcatgtttggcacgaccacttgagtgagactctgacccaatattcttccttgactc |
39298060 |
T |
|
| Q |
118 |
atgtactacttcatcatcctcaccaacaacaatgactttagttgtatgtgcaatttcagctatggtttcaccaatagcatccaaaacaccaccaccttgt |
217 |
Q |
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|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39298061 |
atctaatacttcatcatcctcaccaacaacaatgactttagttgtatgtgcaatttcagctatggtttcaccaatagcatccaaaacaccaccaccttgt |
39298160 |
T |
|
| Q |
218 |
ccctcttgagaaagattaactttactattatctgttgctttaaccatgttatttccaatatcactcacagtttcagtcacagctcccaatacatcacttc |
317 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39298161 |
ccctcttgagaaatattaactttactattatctgttgctttaaccatgttatttccaatatcactcacagtttcagtcacagctcccaatacatcacttc |
39298260 |
T |
|
| Q |
318 |
ctcctaatggtttatcacttcctccttgtacttgacctgaacttgtcatgttttcaaatggtttcttcattttatcaccaacatttgcc |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39298261 |
ctcctaatggtttatcacttcctccttgtacttgacctgtacttgtcatgttttcaaatggtttcttcattttatcaccaacatttgcc |
39298349 |
T |
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