View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6645_low_9 (Length: 338)
Name: NF6645_low_9
Description: NF6645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6645_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 17 - 211
Target Start/End: Complemental strand, 32731392 - 32731200
Alignment:
| Q |
17 |
atcaacgatattgtgcccttagaggtagacaacattaattatgtttcctcattatnnnnnnntacctatgataattagtctagtgacgagtattgaatct |
116 |
Q |
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| T |
32731392 |
atcaacaatattgtgcccttagaggtagacaacattaattatgtttcctcattataaaaaaatacctatgataattagtctagtgacgagtattgaatct |
32731293 |
T |
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| Q |
117 |
taaacagatacctagggatcagtgaagggtcattctaattgatacaccttcattaaaaaatagaactgtacccatcaacaagagaacctatatct |
211 |
Q |
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| T |
32731292 |
taaacagataccttg--atcagtgaagggtcattctaattgatacaccttcattaaaaaatagaactgtacccatcaacaagagaacctatatct |
32731200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 228 - 331
Target Start/End: Complemental strand, 32731213 - 32731110
Alignment:
| Q |
228 |
gagaacctatatctaacacagctcttcgattaatgaaaaatctcgatattgttaatgaaaaatatctaatgtaatgatcatattattcttttatagtatt |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
32731213 |
gagaacctatatctaacacagctcttcgattaatgaaaaatctcgatattgttaatgaaaaatatctaatgtattgatcatattattcttttatagtagt |
32731114 |
T |
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| Q |
328 |
atct |
331 |
Q |
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|||| |
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| T |
32731113 |
atct |
32731110 |
T |
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