View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6646_high_10 (Length: 350)

Name: NF6646_high_10
Description: NF6646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6646_high_10
NF6646_high_10
[»] chr6 (1 HSPs)
chr6 (13-303)||(13327917-13328207)
[»] chr4 (8 HSPs)
chr4 (14-303)||(33832004-33832295)
chr4 (21-303)||(37919491-37919775)
chr4 (138-303)||(46596498-46596663)
chr4 (87-298)||(37074181-37074392)
chr4 (108-258)||(7567756-7567905)
chr4 (138-303)||(6679360-6679525)
chr4 (138-303)||(22505430-22505595)
chr4 (213-303)||(50959907-50959997)
[»] chr8 (2 HSPs)
chr8 (14-297)||(36998094-36998369)
chr8 (138-303)||(43734134-43734299)
[»] chr3 (1 HSPs)
chr3 (87-298)||(36497942-36498153)
[»] chr2 (2 HSPs)
chr2 (138-303)||(38503446-38503611)
chr2 (216-297)||(32666011-32666092)
[»] chr5 (2 HSPs)
chr5 (138-303)||(18843-19008)
chr5 (138-303)||(21292229-21292394)
[»] chr7 (6 HSPs)
chr7 (92-296)||(42360000-42360204)
chr7 (87-303)||(37980526-37980742)
chr7 (108-258)||(8983475-8983624)
chr7 (216-303)||(45187213-45187300)
chr7 (138-297)||(6997934-6998093)
chr7 (138-303)||(44266093-44266256)
[»] chr1 (2 HSPs)
chr1 (218-297)||(35023526-35023605)
chr1 (215-267)||(52982024-52982076)


Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 303
Target Start/End: Original strand, 13327917 - 13328207
Alignment:
Q  13 aatatttggagatgcagaaacattacatacaattggtgtaggtgattgaaggtaatagaccttgttgttcacaacctgctccaattgtatttccggtact 112  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  13327917 aatatctggagatgcagaaacatcacatacaattggtgtaggtgattgaaggtaatagaccatgttgttcacagtctgctccaattgtatttccggtact 13328016  T
Q  113 ttggtcttgtataaggagagaaccagaagtaaatgttatggaacgattgagagaacatgtaagcttaatgattgaaatcatattgaaggggcagccgggg 212  Q
    |||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  13328017 ttggtcttgtataaagagagaaccagaagtaaatgttatgaaacaattgagagaacatgtaagcttaatgattgaaatcaaattgaaagggcagccgggg 13328116  T
Q  213 acaaataacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaacggtaa 303  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  13328117 acaaataacacataatccaaggatagagatagcaaaggtgaagctttaccaataccaataacctgcgccttagaatcattagcaagggtaa 13328207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 14 - 303
Target Start/End: Complemental strand, 33832295 - 33832004
Alignment:
Q  14 atatttggagatgcagaaacattacatacaattggtgtaggtgattgaaggtaataga--ccttgttgttcacaacctgctccaattgtatttccggtac 111  Q
    |||| |||||||||||||||||| |||||| |||||| ||||| || |||||||||||  |||||||||| | | |||||||||||| ||||||| ||||    
T  33832295 atatctggagatgcagaaacattgcatacagttggtgaaggtggttcaaggtaatagagaccttgttgtttagagcctgctccaattttatttcctgtac 33832196  T
Q  112 tttggtcttgtataaggagagaaccagaagtaaatgttatggaacgattgagagaacatgtaagcttaatgattgaaatcatattgaaggggcagccggg 211  Q
    ||||||||| ||||| || ||||| |||||||||||||||||||| || ||||||||  ||| ||||| |||||||||||| ||||||||||||||| ||    
T  33832195 tttggtcttttataaagaaagaactagaagtaaatgttatggaacaatcgagagaactagtaggcttactgattgaaatcaaattgaaggggcagccagg 33832096  T
Q  212 gacaaataacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaacggtaa 303  Q
     |||||||||||||||||||| | ||||||||  || ||||| |||| ||||||||| ||||| || ||||||||| ||||||||| |||||    
T  33832095 cacaaataacacataatccaaaggtagagatggcaagggtgacgcttgaccaataccggtaacttgtgccttagaaccattagcaagggtaa 33832004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 21 - 303
Target Start/End: Original strand, 37919491 - 37919775
Alignment:
Q  21 gagatgcagaaacattacatacaattggtgtaggtgattgaaggtaataga--ccttgttgttcacaacctgctccaattgtatttccggtactttggtc 118  Q
    |||||||||||||||| |||||| |||||| ||||| || |||||| ||||  |||||||||  | | |||||||||||| ||||||| |||||||||||    
T  37919491 gagatgcagaaacattgcatacagttggtgaaggtggtttaaggtagtagagaccttgttgtatagagcctgctccaattttatttcctgtactttggtc 37919590  T
Q  119 ttgtataaggagagaaccagaagtaaatgttatggaacgattgagagaacatgtaagcttaatgattgaaatcatattgaaggggcagccggggacaaat 218  Q
    || ||||| || ||||||| |||||||||||||||||| || ||||||||  ||||| ||| |||||||||||| |||||||||||| || || ||||||    
T  37919591 ttttataaagaaagaaccaaaagtaaatgttatggaacaatcgagagaactagtaagtttactgattgaaatcaaattgaaggggcaaccaggcacaaat 37919690  T
Q  219 aacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaacggtaa 303  Q
    |||||||||||||| | ||||||||  || ||||| |||| ||||||||| ||||| || ||||||||| ||||||||| |||||    
T  37919691 aacacataatccaaaggtagagatggcaagggtgacgcttgaccaataccggtaacttgtgccttagaaccattagcaagggtaa 37919775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 138 - 303
Target Start/End: Original strand, 46596498 - 46596663
Alignment:
Q  138 gaagtaaatgttatggaacgattgagagaacatgtaagcttaatgattgaaatcatattgaaggggcagccggggacaaataacacataatccaaggata 237  Q
    |||| |||||||||||||| |||||||||    ||||||||| ||||||| |||| ||| || || || || || |||||||||||||||| ||| ||||    
T  46596498 gaagaaaatgttatggaacaattgagagagtcagtaagcttactgattgatatcaaattaaaaggacaaccaggtacaaataacacataattcaatgata 46596597  T
Q  238 gagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaacggtaa 303  Q
    ||||||| | |||||| || | ||||||||||||||| || ||||||||| ||||||||| |||||    
T  46596598 gagatgatagaggtgatgcctgaccaataccagtaacttgtgccttagaaccattagcaagggtaa 46596663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 87 - 298
Target Start/End: Complemental strand, 37074392 - 37074181
Alignment:
Q  87 cctgctccaattgtatttccggtactttggtcttgtataaggagagaaccagaagtaaatgttatggaacgattgagagaacatgtaagcttaatgattg 186  Q
    |||| ||||||||| ||||| ||| || ||||||||||||||| |||  |  ||| ||||||||| |||| |||||||||    ||||| ||| ||||||    
T  37074392 cctgttccaattgtctttcccgtatttcggtcttgtataaggaaagagtcgaaagaaaatgttatagaacaattgagagattgagtaagtttagtgattg 37074293  T
Q  187 aaatcatattgaaggggcagccggggacaaataacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttaga 286  Q
    | |||| ||| || || |  |  || |  ||||||||||||| ||| ||||||||||  | ||| ||||||| ||||||||||||||| || ||||||||    
T  37074292 agatcaaattaaaaggacttctaggtatgaataacacataattcaatgatagagatggcagaggagaagcttgaccaataccagtaacttgtgccttaga 37074193  T
Q  287 atcattagcaac 298  Q
    ||||||||||||    
T  37074192 atcattagcaac 37074181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 108 - 258
Target Start/End: Original strand, 7567756 - 7567905
Alignment:
Q  108 gtactttggtcttgtataaggagagaaccagaagtaaatgttatggaacgattgagagaacatgtaagcttaatgattgaaatcatattgaaggggcagc 207  Q
    ||||||||||||||||||| || |||  || |||||||||| ||||||| |||||||||| | ||||| |||  ||||||||||| ||  ||||||||      
T  7567756 gtactttggtcttgtataaagaaagagtcataagtaaatgt-atggaacaattgagagaataagtaagtttacagattgaaatcaaatcaaaggggcact 7567854  T
Q  208 cggggacaaataacacataatccaaggatagagatgaaaaaggtgaagctt 258  Q
    | || ||||||||||  ||||| |||||||||||||  |||||||||||||    
T  7567855 caggtacaaataacatgtaatctaaggatagagatggcaaaggtgaagctt 7567905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 303
Target Start/End: Complemental strand, 6679525 - 6679360
Alignment:
Q  138 gaagtaaatgttatggaacgattgagagaacatgtaagcttaatgattgaaatcatattgaaggggcagccggggacaaataacacataatccaaggata 237  Q
    |||| |||||||||||||| |||||||||     |||||||| ||||||| |||| ||| || || || || || |||||||||||||||| ||| ||||    
T  6679525 gaagaaaatgttatggaacaattgagagagtcaataagcttactgattgatatcaaattaaaaggacaaccaggtacaaataacacataattcaatgata 6679426  T
Q  238 gagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaacggtaa 303  Q
    ||||||  | |||||| || | ||||| ||||||||| || ||||||||| ||||||||| |||||    
T  6679425 gagatggtagaggtgaggcctgaccaaaaccagtaacttgtgccttagaaccattagcaagggtaa 6679360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 303
Target Start/End: Original strand, 22505430 - 22505595
Alignment:
Q  138 gaagtaaatgttatggaacgattgagagaacatgtaagcttaatgattgaaatcatattgaaggggcagccggggacaaataacacataatccaaggata 237  Q
    |||| |||||||||||||| |||||||||  | ||||||||| ||||||| |||| ||| || || || || || ||||||||||||||||  || ||||    
T  22505430 gaagaaaatgttatggaacaattgagagagtaagtaagcttactgattgatatcaaattaaaaggacaaccaggtacaaataacacataattaaatgata 22505529  T
Q  238 gagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaacggtaa 303  Q
    ||||||  | |||||| |  | |||||||| |||||| || ||||||||| ||||||||| |||||    
T  22505530 gagatggtagaggtgatgtctgaccaatactagtaacttgtgccttagaaccattagcaagggtaa 22505595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 303
Target Start/End: Complemental strand, 50959997 - 50959907
Alignment:
Q  213 acaaataacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaacggtaa 303  Q
    |||||||||||||||| ||| ||||||||||  | |||||| || | ||||||||||||||| || ||||||||| ||||||||| |||||    
T  50959997 acaaataacacataattcaatgatagagatggcagaggtgaggcctgaccaataccagtaacttgtgccttagaaccattagcaagggtaa 50959907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 14 - 297
Target Start/End: Complemental strand, 36998369 - 36998094
Alignment:
Q  14 atatttggagatgcagaaacattacatacaattggtgtaggtgattgaaggtaataga--ccttgttgttcacaacctgctccaattgtatttccggtac 111  Q
    |||| |||||||||| ||||||| |||||| |||||| |||||||| ||||||| |||  ||||||  |||| | ||||||||||||  |||||| ||||    
T  36998369 atatctggagatgcataaacattgcatacagttggtgaaggtgattcaaggtaacagagaccttgtcattcagagcctgctccaatttgatttcctgtac 36998270  T
Q  112 tttggtcttgtataaggagagaaccagaagtaaatgttatggaacgattgagagaacatgtaagcttaatgattgaaatcatattgaaggggcagccggg 211  Q
    ||||||||| ||||| ||||||       |||||||||||  ||| |||||||||||  |||||| || |||||||||||| |||||| |||||||| ||    
T  36998269 tttggtcttttataaagagagat------gtaaatgttataaaacaattgagagaacgagtaagcctactgattgaaatcaaattgaaagggcagccagg 36998176  T
Q  212 gacaaataacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaa 297  Q
     |||||||||||||||| ||||| ||||||||  |  ||||||||||    |||||||||||| || ||||||||| |||||||||    
T  36998175 tacaaataacacataatgcaagggtagagatggcaggggtgaagctt----aataccagtaacttgtgccttagaaccattagcaa 36998094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 138 - 303
Target Start/End: Complemental strand, 43734299 - 43734134
Alignment:
Q  138 gaagtaaatgttatggaacgattgagagaacatgtaagcttaatgattgaaatcatattgaaggggcagccggggacaaataacacataatccaaggata 237  Q
    |||| ||||||||| |||| |||||||||    ||||||||| ||||||| |||| ||| || || || || || |||||||||||||||| ||| ||||    
T  43734299 gaagaaaatgttatagaacaattgagagagtcagtaagcttactgattgatatcaaattaaaaggacaaccaggtacaaataacacataattcaatgata 43734200  T
Q  238 gagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaacggtaa 303  Q
    ||||||  | |||||| || | ||||||||||||||| || ||||||||| ||||||||| |||||    
T  43734199 gagatggtagaggtgaggcctgaccaataccagtaacttgtgccttagaaccattagcaagggtaa 43734134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 87 - 298
Target Start/End: Complemental strand, 36498153 - 36497942
Alignment:
Q  87 cctgctccaattgtatttccggtactttggtcttgtataaggagagaaccagaagtaaatgttatggaacgattgagagaacatgtaagcttaatgattg 186  Q
    |||| ||||||||| ||||| |||||| ||||||||||||||| |||| | |||| ||||||||| |||| |||||||||    ||||| ||| ||||||    
T  36498153 cctgttccaattgtctttcccgtacttcggtcttgtataaggaaagaatcggaagaaaatgttatagaacaattgagagattgagtaagtttactgattg 36498054  T
Q  187 aaatcatattgaaggggcagccggggacaaataacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttaga 286  Q
    | |||| ||| || || |  || |  |  | ||||||||||| ||||||||||||||  | ||| ||||||| ||||||||||||||| || ||||||||    
T  36498053 agatcaaattaaaaggacttccagttatgagtaacacataattcaaggatagagatggcagaggagaagcttgaccaataccagtaacttgtgccttaga 36497954  T
Q  287 atcattagcaac 298  Q
    | ||||||||||    
T  36497953 accattagcaac 36497942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 303
Target Start/End: Complemental strand, 38503611 - 38503446
Alignment:
Q  138 gaagtaaatgttatggaacgattgagagaacatgtaagcttaatgattgaaatcatattgaaggggcagccggggacaaataacacataatccaaggata 237  Q
    |||| |||||||||||||| |||||||||    ||||||||| ||||||| |||| ||| || || || || || |||||||||||||||| ||| ||||    
T  38503611 gaagaaaatgttatggaacaattgagagagtcagtaagcttactgattgatatcaaattaaaaggacaaccaggtacaaataacacataattcaatgata 38503512  T
Q  238 gagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaacggtaa 303  Q
    ||||||  | |||||| || | ||||||||||||||| || ||||||||| ||||||||| |||||    
T  38503511 gagatggtagaggtgaggcctgaccaataccagtaacttgtgccttagaaccattagcaagggtaa 38503446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 297
Target Start/End: Original strand, 32666011 - 32666092
Alignment:
Q  216 aataacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaa 297  Q
    |||| ||||| || ||||| ||||||||  ||||||||||||| ||||||||||||||| || | ||||||| |||||||||    
T  32666011 aataccacatgattcaagggtagagatggcaaaggtgaagcttgaccaataccagtaacttgtgacttagaagcattagcaa 32666092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 138 - 303
Target Start/End: Complemental strand, 19008 - 18843
Alignment:
Q  138 gaagtaaatgttatggaacgattgagagaacatgtaagcttaatgattgaaatcatattgaaggggcagccggggacaaataacacataatccaaggata 237  Q
    |||| |||||||||||||| |||||||||    ||||||||| ||||||| |||| ||| || || || || || |||||||||||||||| ||| ||||    
T  19008 gaagaaaatgttatggaacaattgagagagtcagtaagcttactgattgatatcaaattaaaaggacaaccaggtacaaataacacataattcaatgata 18909  T
Q  238 gagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaacggtaa 303  Q
    ||||||  | |||||| || | ||||||||||||||| || |||||||||  |||||||| |||||    
T  18908 gagatggcagaggtgaggcctgaccaataccagtaacttgtgccttagaacaattagcaagggtaa 18843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 138 - 303
Target Start/End: Complemental strand, 21292394 - 21292229
Alignment:
Q  138 gaagtaaatgttatggaacgattgagagaacatgtaagcttaatgattgaaatcatattgaaggggcagccggggacaaataacacataatccaaggata 237  Q
    |||| |||||||||||||| |||||||||    ||||||||| ||||||| |||| ||| || || || || || |||||||||||||||| ||| ||||    
T  21292394 gaagaaaatgttatggaacaattgagagagtcagtaagcttactgattgatatcaaattaaaaggacaaccaggtacaaataacacataattcaatgata 21292295  T
Q  238 gagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaacggtaa 303  Q
     |||||  |  ||||| || | ||||||||||||||| ||  |||||||| ||||||||| |||||    
T  21292294 aagatggcaggggtgaggcctgaccaataccagtaacttgttccttagaaccattagcaagggtaa 21292229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 296
Target Start/End: Original strand, 42360000 - 42360204
Alignment:
Q  92 tccaattgtatttccggtactttggtcttgtataaggagagaaccagaagtaaatgttatggaacgattgagagaacatgtaagcttaatgattgaaatc 191  Q
    ||||||||| ||||| |||||| ||||||||||||||| |||  |||||| |||||||||||||| |||||||||    || || ||| ||||||| |||    
T  42360000 tccaattgtctttcccgtacttcggtcttgtataaggaaagagtcagaagaaaatgttatggaacaattgagagattgagtgagtttactgattgagatc 42360099  T
Q  192 atattgaaggggcagccggggacaaataacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcat 291  Q
    | ||| || || |  || |  |  ||||||||||||| ||| ||||||||||  | ||| ||||||| ||||||||||||||| || |||||| || |||    
T  42360100 aaattaaaaggacttccagatatgaataacacataattcaatgatagagatggcagaggagaagcttgaccaataccagtaacttgtgccttataaccat 42360199  T
Q  292 tagca 296  Q
    |||||    
T  42360200 tagca 42360204  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 87 - 303
Target Start/End: Original strand, 37980526 - 37980742
Alignment:
Q  87 cctgctccaattgtatttccggtactttggtcttgtataaggagagaaccagaagtaaatgttatggaacgattgagagaacatgtaagcttaatgattg 186  Q
    |||| ||||||||| ||||| |||||| ||||||||||||||| |||  | |||| ||||||||| |||| |||||||||    ||||| ||| | ||||    
T  37980526 cctgttccaattgtctttcccgtacttcggtcttgtataaggaaagagtcggaagaaaatgttatagaacaattgagagattgagtaagtttactaattg 37980625  T
Q  187 aaatcatattgaaggggcagccggggacaaataacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttaga 286  Q
    | |||| ||| || || |  |  || |  ||||||||||||| ||| ||||||||||  | ||| ||||||| ||||||||||||||  || ||||||||    
T  37980626 atatcaaattaaaaggacttctaggtatgaataacacataattcaatgatagagatggcagaggagaagcttgaccaataccagtaaattgtgccttaga 37980725  T
Q  287 atcattagcaacggtaa 303  Q
    | |||||||||| ||||    
T  37980726 accattagcaacagtaa 37980742  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 108 - 258
Target Start/End: Complemental strand, 8983624 - 8983475
Alignment:
Q  108 gtactttggtcttgtataaggagagaaccagaagtaaatgttatggaacgattgagagaacatgtaagcttaatgattgaaatcatattgaaggggcagc 207  Q
    ||||||||||||||||||| || |||  || |||||||||  ||||||| |||||||||| | ||||| |||  ||||||||||| ||  ||||||||      
T  8983624 gtactttggtcttgtataaagaaagagtcataagtaaatgc-atggaacaattgagagaataagtaagtttacagattgaaatcaaatcaaaggggcact 8983526  T
Q  208 cggggacaaataacacataatccaaggatagagatgaaaaaggtgaagctt 258  Q
    | || ||||||||||  ||||| |||||||||||||  |||||||||||||    
T  8983525 caggtacaaataacatgtaatctaaggatagagatggcaaaggtgaagctt 8983475  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 303
Target Start/End: Original strand, 45187213 - 45187300
Alignment:
Q  216 aataacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaacggtaa 303  Q
    |||||||| |||| ||| ||||||||||  | ||| ||||||| ||||||||||||||| || ||||||||| |||||||||| ||||    
T  45187213 aataacacctaattcaatgatagagatggcagaggagaagcttgaccaataccagtaacttgtgccttagaaccattagcaacagtaa 45187300  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 297
Target Start/End: Complemental strand, 6998093 - 6997934
Alignment:
Q  138 gaagtaaatgttatggaacgattgagagaacatgtaagcttaatgattgaaatcatattgaaggggcagccggggacaaataacacataatccaaggata 237  Q
    |||| |||||||||| ||| |||||||||    ||||||||| | ||||| |||| ||| || || |  || || |||||||| ||||| | ||| ||||    
T  6998093 gaagaaaatgttatgcaacaattgagagagtcagtaagcttactaattgatatcaaattaaaaggacgaccaggtacaaataaaacatagttcaatgata 6997994  T
Q  238 gagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaa 297  Q
    ||||||  | |||||| || | ||||||||||||||| || ||||||||| |||||||||    
T  6997993 gagatggcagaggtgaggcctgaccaataccagtaacttgtgccttagaaccattagcaa 6997934  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 303
Target Start/End: Original strand, 44266093 - 44266256
Alignment:
Q  138 gaagtaaatgttatggaacgattgagagaa-catgtaagcttaatgattgaaatcatattgaaggggcagccggggacaaataacacataatccaaggat 236  Q
    |||| |||||||||||||| |||||||||  ||| |||||||| ||||||| |||  ||| || || || || || ||||||||||||  || |||  ||    
T  44266093 gaagaaaatgttatggaacaattgagagagtcat-taagcttactgattgatatcgaattaaaaggacaaccaggtacaaataacaca--attcaataat 44266189  T
Q  237 agagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaacggtaa 303  Q
    |||||||  | |||||| || | ||||||||||||||| || ||||||||| ||||||||| |||||    
T  44266190 agagatggcagaggtgaggcctgaccaataccagtaacttgtgccttagaaccattagcaagggtaa 44266256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 297
Target Start/End: Complemental strand, 35023605 - 35023526
Alignment:
Q  218 taacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaa 297  Q
    ||||||||||| ||  ||||||||||| ||||||||| ||| ||||||||||||||| || ||||| ||| |||||||||    
T  35023605 taacacataattcagagatagagatgacaaaggtgaaacttgaccaataccagtaacttgtgccttggaaccattagcaa 35023526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 52982024 - 52982076
Alignment:
Q  215 aaataacacataatccaaggatagagatgaaaaaggtgaagctttaccaatac 267  Q
    |||||||||||||| |||||||| |||||  | ||||||||||| ||||||||    
T  52982024 aaataacacataattcaaggataaagatggcagaggtgaagcttgaccaatac 52982076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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