View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6646_high_11 (Length: 342)
Name: NF6646_high_11
Description: NF6646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6646_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 36770842 - 36771155
Alignment:
| Q |
18 |
cctttattgtttactattaagggcatgtcctaattcagttgtgcttcataggatcatagataaaaggattgtgttcagtttgctatttattgcaactgca |
117 |
Q |
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| T |
36770842 |
cctttattgtttactattaagggcatgtcctaattcagttgtgcttcataggatcatagataaaaggattgtgttgagtttgctatttattgcaactgca |
36770941 |
T |
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| Q |
118 |
attcagctgattttgaccgaagcaggtattcattttgcagtgactttgacttgtagtgtacctgtagttttgcttcatgcagtgttatgggctggtagtt |
217 |
Q |
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| T |
36770942 |
attcagctgattttgaccgaagcaggtattcattttgcagtgactttgacttgtagtgtacctgtagttttgcttcatgcagtgttatgggctggtagtt |
36771041 |
T |
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| Q |
218 |
atgaatatgatgcgtatgaaactgaggaaggttctggtaaagaagaattggctcctcttaccggcagccagaatgatagtgaacctcataacgtcgatgt |
317 |
Q |
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| T |
36771042 |
atgaatatgatgcgtatgaaactgaggaaggttctggtaaagaagaattggctcctcttaccggcagccagaatgatagtgaacctcataacgtcgatgt |
36771141 |
T |
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| Q |
318 |
tgtttgattgatga |
331 |
Q |
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| T |
36771142 |
tgtttgatttatga |
36771155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 296
Target Start/End: Original strand, 36773086 - 36773358
Alignment:
| Q |
18 |
cctttattgtttactattaagggcatgtcctaattcagttgtgcttcataggatcatagataaaaggattgtgttcagtttgctatttattgcaactgca |
117 |
Q |
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||||||||||||| || ||||| |||||||||||||| |||||||||| ||||||||||||| |||||| || | ||| || | |||||||||||| |
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| T |
36773086 |
cctttattgtttaatactaaggtcatgtcctaattcacacttgcttcatagaatcatagataaaaagattgtattgacttttttagtaattgcaactgca |
36773185 |
T |
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| Q |
118 |
attcagctgattttgaccgaagcaggtattcattttgcagtgactttgacttgtagtgtacctgtagttttgcttcatgcagtgttatgggctggtagtt |
217 |
Q |
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| T |
36773186 |
attcagctgattatgactgatgccggtactcattttgcaattacttcgacttgtagtgtgccggtagttttgcttcatgcagttttatgggatagtagt- |
36773284 |
T |
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| Q |
218 |
atgaatatgatgcgtatgaaactgaggaaggttctggtaaagaagaattggctcctcttaccggcagccagaatgatag |
296 |
Q |
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||||||| ||||| ||| ||||||||||||||| | |||||||||||||||||||| ||||||| |||||||| |
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| T |
36773285 |
-----tatgatggttatgagactaaggaaggttctggtacacaagaattggctcctcttaccagcagccaaaatgatag |
36773358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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