View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6646_high_13 (Length: 323)
Name: NF6646_high_13
Description: NF6646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6646_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 99 - 307
Target Start/End: Complemental strand, 9880295 - 9880087
Alignment:
| Q |
99 |
ctcttctctctaaggatgggatgaattcctatatttctgataatctcatttgttttactatctctggtgctatcccaaaccaggatgtcttggtctctag |
198 |
Q |
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| T |
9880295 |
ctcttctctctaaggatgggatgaattcctataattctgataatcccatttgttttactatctctggtgctatcccaaaccaggatgtcttggtctctag |
9880196 |
T |
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| Q |
199 |
tcctaagtcagctccttttacaagaagctaaaataggatctaactcataagatattaaaggaaacttatctgccatggtggtggaccataaccaagagac |
298 |
Q |
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| T |
9880195 |
tcctaagtcagctccttttacaagaagctaaaataggatctaattcataagatattaaaggaaacttatctgccatggtggtggaccataaccaagagac |
9880096 |
T |
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| Q |
299 |
ttcaatact |
307 |
Q |
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| T |
9880095 |
ttcaatact |
9880087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 9880723 - 9880652
Alignment:
| Q |
16 |
attggagaccaacatttctttttgaaattgcttctagtttgggcacacc-ctctttccattgatgaatccac |
86 |
Q |
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| T |
9880723 |
attggagaccaacatttctttttgaaattacttctagtttgggcacccctctctttccattgatgaatccac |
9880652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 23262885 - 23262960
Alignment:
| Q |
10 |
aagaatattggagaccaacatttctttttgaaattgcttctagtttgggcacaccctctttccattgatgaatccac |
86 |
Q |
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| T |
23262885 |
aagagtattagagaccaacattgctttttgaaattgcatctagtgtggacgc-ccctctttccattgatgaatccac |
23262960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 23263492 - 23263572
Alignment:
| Q |
136 |
tgataatctcatttgttttactatctctggtgctatcccaaaccaggatgtcttggtctctagtcctaagtcagctccttt |
216 |
Q |
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| T |
23263492 |
tgataatcccatttatgttactatctctttcattatcccaaatctggatggcttgttctctagtcctaagtcagcttcttt |
23263572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 11774901 - 11774945
Alignment:
| Q |
36 |
tttgaaattgcttctagtttgggcacaccctctttccattgatgaa |
81 |
Q |
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| T |
11774901 |
tttgaaattgcctctagtttgggcacaccc-cttaccattgatgaa |
11774945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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