View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6646_high_14 (Length: 284)
Name: NF6646_high_14
Description: NF6646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6646_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 25 - 266
Target Start/End: Original strand, 10425778 - 10426015
Alignment:
| Q |
25 |
tgggttgtgagggggaagagaagtttatgaagcacggcactgcaaaattatagtggtgattatattcgtgcttcccatcttgacaacattttctcattta |
124 |
Q |
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| T |
10425778 |
tgggttgtgagggggaagagaagtttatgaagcacggcactgcaaaattatagtggtgattatattcgtgcttcccatcttgacaacattttttcattta |
10425877 |
T |
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| Q |
125 |
ttcaaattttgactaatacacatatcaatatcatattatattatgagtaatgctaacgttgaatcaaactaaggtcccttaattagatctgaattacaca |
224 |
Q |
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| T |
10425878 |
ttcaaattttgactaatacacatatcaatatcatattatattatgagtaatgctaacgttgaatgaaactaaggttcc----ttagatctgaattacaca |
10425973 |
T |
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| Q |
225 |
tgtcgtttaaggagtacagattgtataatcaagcaatactcc |
266 |
Q |
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| T |
10425974 |
tgtcgtttaaggagtacaggttgtataatcaagcaatactcc |
10426015 |
T |
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