View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6646_high_16 (Length: 270)

Name: NF6646_high_16
Description: NF6646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6646_high_16
NF6646_high_16
[»] chr4 (6 HSPs)
chr4 (1-94)||(5181476-5181569)
chr4 (1-93)||(5159249-5159341)
chr4 (43-94)||(5194831-5194882)
chr4 (32-93)||(4843278-4843339)
chr4 (95-133)||(4843423-4843461)
chr4 (95-129)||(5172102-5172136)


Alignment Details
Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 5181569 - 5181476
Alignment:
Q  1 tggagaatcctagatgacaaattggtatgggaatatgattaagatgtcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatgg 94  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||  |||||||||||||||||||||||    
T  5181569 tggagaatcctagatgagaaattggtatgggaatatgataaagatggcatttactcattgaagtcggcaacctatcgcgtcaaagaggaaatgg 5181476  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 5159341 - 5159249
Alignment:
Q  1 tggagaatcctagatgacaaattggtatgggaatatgattaagatgtcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatg 93  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||  |||||||||||||||| |||||    
T  5159341 tggagaatcctagatgacaaattggtatgggaatatgataaagatggcatttactcattgaagttggcaacctatcgcgtcaaagagaaaatg 5159249  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 5194882 - 5194831
Alignment:
Q  43 gatgtcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatgg 94  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5194882 gatggcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatgg 5194831  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 4843278 - 4843339
Alignment:
Q  32 aatatgattaagatgtcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatg 93  Q
    |||||||| |||||| |||||||||||||||||||||| ||||||||||||||||| |||||    
T  4843278 aatatgataaagatggcatttactcattgaagtcggcaaactatcgcgtcaaagagaaaatg 4843339  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 133
Target Start/End: Original strand, 4843423 - 4843461
Alignment:
Q  95 aaagagtattatgtggagagtgacaaaacatattttttc 133  Q
    |||||||||||||||||||||| |||| |||||||||||    
T  4843423 aaagagtattatgtggagagtggcaaaccatattttttc 4843461  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 129
Target Start/End: Complemental strand, 5172136 - 5172102
Alignment:
Q  95 aaagagtattatgtggagagtgacaaaacatattt 129  Q
    |||||||||||||||||||||| ||||||||||||    
T  5172136 aaagagtattatgtggagagtggcaaaacatattt 5172102  T

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