View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6646_high_18 (Length: 255)
Name: NF6646_high_18
Description: NF6646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6646_high_18 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 54116124 - 54115874
Alignment:
| Q |
1 |
tatgccacttcatttgtggttcatcaacatttttggatggatactcctaatagatcactcctagaattctgtcatcaaccagtcaattatcaaagaaagt |
100 |
Q |
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| T |
54116124 |
tatgccacttcattagtggttcatcaacatttttggatggatactcctaatagatcactcctagaattctgtcatcaaccagtcaattatcaaagaaagt |
54116025 |
T |
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| Q |
101 |
aagaattatagcagcctgcaacttcaatttttcccaacaagtgctcaaatcctgcataaacaaacaacttaatgtcatataaatttaatgcctaaaacga |
200 |
Q |
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| T |
54116024 |
aagaattatagcagcctgcaacttcaatttttcccaacaagtgctcaaatcctgcataaacaaacaacttaatgtcatataaatttaatgcctaaaacga |
54115925 |
T |
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| Q |
201 |
agtatggctgtttatttaaccaggttttatagctaagtaattgtacacatatata |
255 |
Q |
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| T |
54115924 |
agtatggctgtttatttaaccaggttttatagc----taattgtacacatatata |
54115874 |
T |
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 191
Target Start/End: Original strand, 23277164 - 23277261
Alignment:
| Q |
93 |
aagaaagtaagaattatagcagcctgcaacttcaatttttcccaacaagtgctcaaatcctgcataaacaaacaacttaatgtcatataaatttaatgc |
191 |
Q |
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||||||||||||| |||||||||||| |||||| ||| | ||| ||||| |||||||||||||||||||||| | |||||||||||| |||||||| |
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| T |
23277164 |
aagaaagtaagaactatagcagcctgaaacttcgattctaccccacaagaactcaaatcctgcataaacaaacca-aaaatgtcatataattttaatgc |
23277261 |
T |
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