View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6646_high_20 (Length: 251)
Name: NF6646_high_20
Description: NF6646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6646_high_20 |
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| [»] chr5 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 9880958 - 9880708
Alignment:
| Q |
1 |
atgtcctctctatggccaaatttgaaaaattcaaatattgtgcccctttgcaaaggattctttgcacttctattcaacacagttaaagagatgcaaaaat |
100 |
Q |
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| T |
9880958 |
atgtcctctctatggccaaatttgaaaaattcgaatattgtgcccctttgcaaaggattctttgcacttctattcaacacagttaaagagatgcaaaaat |
9880859 |
T |
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| Q |
101 |
tatggtctttaaggttgttgaatctcaaaccaggcatcttgaggttttcgtgttggacaaaggacttccatccttccaagcaaaaacttttacatgcaca |
200 |
Q |
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| T |
9880858 |
tatggtctttaaggttgttgaatctcaaactaggcatcttgaggttttcgtgttggacaaaggacttccatccttccaagcaaaaacttttacatgcaca |
9880759 |
T |
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| Q |
201 |
agtttggattcaaattatgaacctcccccaagaatattggagaccaacatt |
251 |
Q |
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| T |
9880758 |
agtttggattcaaattatgaacctcccccaagagcattggagaccaacatt |
9880708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 76 - 251
Target Start/End: Original strand, 23262731 - 23262906
Alignment:
| Q |
76 |
aacacagttaaagagatgcaaaaattatggtctttaaggttgttgaatctcaaaccaggcatcttgaggttttcgtgttggacaaaggacttccatcctt |
175 |
Q |
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||||||||| ||||||||| |||| ||||||||||||||| ||||| ||||||||||| ||| | |||||||||||||| ||||||||||||| |||| | |
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| T |
23262731 |
aacacagttgaagagatgcgaaaaatatggtctttaaggtagttgagtctcaaaccagtcatatcgaggttttcgtgttcgacaaaggacttcaatccat |
23262830 |
T |
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| Q |
176 |
ccaagcaaaaacttttacatgcacaagtttggattcaaattatgaacctcccccaagaatattggagaccaacatt |
251 |
Q |
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| T |
23262831 |
ccaagcaaaaactttcacatgcacaagtttggattcgaattatgaacctcccgcaagagtattagagaccaacatt |
23262906 |
T |
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