View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6646_high_21 (Length: 251)
Name: NF6646_high_21
Description: NF6646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6646_high_21 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 31714528 - 31714769
Alignment:
| Q |
10 |
ataattctaatcctaataattcaatattcattatgattgtatattatcacctaatataattccaannnnnnnnnnnnnnntagactccataaaccattat |
109 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
31714528 |
ataattctaatcctaataattcaacattcattatgattgtatattatcacctaatataattccaaacacacacacacacatagactccataaaccattat |
31714627 |
T |
|
| Q |
110 |
gattgaacattcaaattcggaacaatgtaaagccttgtcctcatttccatagttttttaattatgactgttacacaccttatattatgctatccaaagtt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| || |||||||||||||| |
|
|
| T |
31714628 |
gattgaacattcaaattcggaacaatgtaaagccttgtcctcatttccatagttatttaattatgactgttacacaccatatgttttgctatccaaagtt |
31714727 |
T |
|
| Q |
210 |
caatgttctcaacatactgctagataaataaaagccagaact |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31714728 |
caatgttctcaacatactgctagataaataaaagccagaact |
31714769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University