View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6646_high_22 (Length: 248)
Name: NF6646_high_22
Description: NF6646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6646_high_22 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 31715182 - 31714953
Alignment:
| Q |
18 |
caaaggatgaagaaaatcagatgaattcatgagaagctctacattgttttatttaactcctttggaggaatgtaagtaaacatgtttgtccaccaaagcc |
117 |
Q |
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| T |
31715182 |
caaaggatgaagaaaatctgatgatttcatgagaagctctacattgttttatttaactcctttggaggaatgtaagtaaacatgtttgtccaccaaagcc |
31715083 |
T |
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| Q |
118 |
atctttcgc----------gtaccgcctttcaacaacaacatctgcccattggatttcaaagtctaacacacattggtgtgcttttgtaattgataataa |
207 |
Q |
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| T |
31715082 |
atctttcgcacacatgtttgtaccgcctttcaacaacaacgtctgcccattggatttcaaagtctaa-----------gtgcttttgtaattgataataa |
31714994 |
T |
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| Q |
208 |
gactcttcacatttcttgcttgattaagagtatttgtattt |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
31714993 |
gactcttcacatttcttgcttgattaagagtatttgtattt |
31714953 |
T |
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