View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6646_high_4 (Length: 490)
Name: NF6646_high_4
Description: NF6646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6646_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 2 - 305
Target Start/End: Original strand, 13868169 - 13868472
Alignment:
| Q |
2 |
gtttatgcttccgttaaaactcattgtgcttttcgcattggaagggaatttaaggtttggcgttggggttgattgaatgtaattagggttattttactaa |
101 |
Q |
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| T |
13868169 |
gtttatgcttccgttaaaactcattgtgcttttcgcattggaagggaatttaaggtttggcgttggggttgattgaatgtaattagggttattttactaa |
13868268 |
T |
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| Q |
102 |
aatgtatgttaaagagtcatttatggatggcttatttctcctattacatgttgatttgacattaatcctcgtgttacttaattttgaaaacattccatgt |
201 |
Q |
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| T |
13868269 |
aatgtatgttaaagagtcatttatgcatggcttatttctcctattacatgttgatttgacattaatcctcgtgttacttaattttgaaaacattcaatgt |
13868368 |
T |
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| Q |
202 |
gacaatattggaaatgaaaaatctgatttccacttatgttgatttatgcatactactgcttgtgacagaattccttaaagcataactaaacctatcaaac |
301 |
Q |
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| T |
13868369 |
gacaatattggaaatgaaaaatctgatttccacttatgttgatttatgcatactactgcttgtgacagaattccttaaagcataactaaacctatcaaac |
13868468 |
T |
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| Q |
302 |
ctgg |
305 |
Q |
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|||| |
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| T |
13868469 |
ctgg |
13868472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 356 - 475
Target Start/End: Original strand, 13872055 - 13872175
Alignment:
| Q |
356 |
atgccagagaaagagaattacaaggaacttaacaagtgaggggataacttgataat-ccataaaacagttaaaaatgaaatgatgttatcaatgctatga |
454 |
Q |
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| T |
13872055 |
atgccggagaaagacaattacaaagaacttaacaagtgaggtgatcacttgatagttccataaaacagttaaaaatgaaattatgctatcaatactatga |
13872154 |
T |
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| Q |
455 |
tttgataagccgacaacttac |
475 |
Q |
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| T |
13872155 |
tttgacaatccgacaagttac |
13872175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 372 - 465
Target Start/End: Original strand, 13874401 - 13874495
Alignment:
| Q |
372 |
attacaaggaacttaacaagtgaggggataacttgataatcca-taaaacagttaaaaatgaaatgatgttatcaatgctatgatttgataagcc |
465 |
Q |
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| T |
13874401 |
attacaaagaacttaacaagtgaggggatcacttgatagtcccgtaaaaccattgaaaattaaatgatgttatcaatgctatgatttgacaagcc |
13874495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 362 - 441
Target Start/End: Original strand, 13882533 - 13882613
Alignment:
| Q |
362 |
gagaaagagaattacaaggaacttaacaagtgaggggataacttgataat-ccataaaacagttaaaaatgaaatgatgtt |
441 |
Q |
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| T |
13882533 |
gagaaagacaattacaaagaacttaacaagtgagaggatcacagtatagtcccataaaacagttaaaaatgaaatgatgtt |
13882613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 473
Target Start/End: Original strand, 16025058 - 16025180
Alignment:
| Q |
352 |
agtgatgccagagaaagagaattacaaggaacttaacaagtgaggggataacttgataatcc-ataaaacagttaaaaatgaaatgatgttatcaatgct |
450 |
Q |
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| T |
16025058 |
agtgatgccggagaaagacaattataaagaacttcacaagtaaatcgatcatttgatagtcccataaaacagttaaaaatgaaatggtgctatcaaggtt |
16025157 |
T |
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| Q |
451 |
atgatttgataagccgacaactt |
473 |
Q |
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||||||| ||||| ||||||| |
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| T |
16025158 |
ctgatttgccaagccaacaactt |
16025180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 459
Target Start/End: Complemental strand, 14392653 - 14392569
Alignment:
| Q |
375 |
acaaggaacttaacaagtgaggggataacttgataat-ccataaaacagttaaaaatgaaatgatgttatcaatgctatgatttga |
459 |
Q |
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| T |
14392653 |
acaatgaactttacaagtgaggggatcacttgatagtcccataaaactgct-aaaatgaactgatgttgtcaatgcttttatttga |
14392569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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