View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6646_low_10 (Length: 350)

Name: NF6646_low_10
Description: NF6646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6646_low_10
NF6646_low_10
[»] chr6 (1 HSPs)
chr6 (13-303)||(13327917-13328207)
[»] chr4 (8 HSPs)
chr4 (14-303)||(33832004-33832295)
chr4 (21-303)||(37919491-37919775)
chr4 (138-303)||(46596498-46596663)
chr4 (87-298)||(37074181-37074392)
chr4 (108-258)||(7567756-7567905)
chr4 (138-303)||(6679360-6679525)
chr4 (138-303)||(22505430-22505595)
chr4 (213-303)||(50959907-50959997)
[»] chr8 (2 HSPs)
chr8 (14-297)||(36998094-36998369)
chr8 (138-303)||(43734134-43734299)
[»] chr3 (1 HSPs)
chr3 (87-298)||(36497942-36498153)
[»] chr2 (2 HSPs)
chr2 (138-303)||(38503446-38503611)
chr2 (216-297)||(32666011-32666092)
[»] chr5 (2 HSPs)
chr5 (138-303)||(18843-19008)
chr5 (138-303)||(21292229-21292394)
[»] chr7 (6 HSPs)
chr7 (92-296)||(42360000-42360204)
chr7 (87-303)||(37980526-37980742)
chr7 (108-258)||(8983475-8983624)
chr7 (216-303)||(45187213-45187300)
chr7 (138-297)||(6997934-6998093)
chr7 (138-303)||(44266093-44266256)
[»] chr1 (2 HSPs)
chr1 (218-297)||(35023526-35023605)
chr1 (215-267)||(52982024-52982076)


Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 303
Target Start/End: Original strand, 13327917 - 13328207
Alignment:
Q  13 aatatttggagatgcagaaacattacatacaattggtgtaggtgattgaaggtaatagaccttgttgttcacaacctgctccaattgtatttccggtact 112  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  13327917 aatatctggagatgcagaaacatcacatacaattggtgtaggtgattgaaggtaatagaccatgttgttcacagtctgctccaattgtatttccggtact 13328016  T
Q  113 ttggtcttgtataaggagagaaccagaagtaaatgttatggaacgattgagagaacatgtaagcttaatgattgaaatcatattgaaggggcagccgggg 212  Q
    |||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  13328017 ttggtcttgtataaagagagaaccagaagtaaatgttatgaaacaattgagagaacatgtaagcttaatgattgaaatcaaattgaaagggcagccgggg 13328116  T
Q  213 acaaataacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaacggtaa 303  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  13328117 acaaataacacataatccaaggatagagatagcaaaggtgaagctttaccaataccaataacctgcgccttagaatcattagcaagggtaa 13328207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 14 - 303
Target Start/End: Complemental strand, 33832295 - 33832004
Alignment:
Q  14 atatttggagatgcagaaacattacatacaattggtgtaggtgattgaaggtaataga--ccttgttgttcacaacctgctccaattgtatttccggtac 111  Q
    |||| |||||||||||||||||| |||||| |||||| ||||| || |||||||||||  |||||||||| | | |||||||||||| ||||||| ||||    
T  33832295 atatctggagatgcagaaacattgcatacagttggtgaaggtggttcaaggtaatagagaccttgttgtttagagcctgctccaattttatttcctgtac 33832196  T
Q  112 tttggtcttgtataaggagagaaccagaagtaaatgttatggaacgattgagagaacatgtaagcttaatgattgaaatcatattgaaggggcagccggg 211  Q
    ||||||||| ||||| || ||||| |||||||||||||||||||| || ||||||||  ||| ||||| |||||||||||| ||||||||||||||| ||    
T  33832195 tttggtcttttataaagaaagaactagaagtaaatgttatggaacaatcgagagaactagtaggcttactgattgaaatcaaattgaaggggcagccagg 33832096  T
Q  212 gacaaataacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaacggtaa 303  Q
     |||||||||||||||||||| | ||||||||  || ||||| |||| ||||||||| ||||| || ||||||||| ||||||||| |||||    
T  33832095 cacaaataacacataatccaaaggtagagatggcaagggtgacgcttgaccaataccggtaacttgtgccttagaaccattagcaagggtaa 33832004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 21 - 303
Target Start/End: Original strand, 37919491 - 37919775
Alignment:
Q  21 gagatgcagaaacattacatacaattggtgtaggtgattgaaggtaataga--ccttgttgttcacaacctgctccaattgtatttccggtactttggtc 118  Q
    |||||||||||||||| |||||| |||||| ||||| || |||||| ||||  |||||||||  | | |||||||||||| ||||||| |||||||||||    
T  37919491 gagatgcagaaacattgcatacagttggtgaaggtggtttaaggtagtagagaccttgttgtatagagcctgctccaattttatttcctgtactttggtc 37919590  T
Q  119 ttgtataaggagagaaccagaagtaaatgttatggaacgattgagagaacatgtaagcttaatgattgaaatcatattgaaggggcagccggggacaaat 218  Q
    || ||||| || ||||||| |||||||||||||||||| || ||||||||  ||||| ||| |||||||||||| |||||||||||| || || ||||||    
T  37919591 ttttataaagaaagaaccaaaagtaaatgttatggaacaatcgagagaactagtaagtttactgattgaaatcaaattgaaggggcaaccaggcacaaat 37919690  T
Q  219 aacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaacggtaa 303  Q
    |||||||||||||| | ||||||||  || ||||| |||| ||||||||| ||||| || ||||||||| ||||||||| |||||    
T  37919691 aacacataatccaaaggtagagatggcaagggtgacgcttgaccaataccggtaacttgtgccttagaaccattagcaagggtaa 37919775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 138 - 303
Target Start/End: Original strand, 46596498 - 46596663
Alignment:
Q  138 gaagtaaatgttatggaacgattgagagaacatgtaagcttaatgattgaaatcatattgaaggggcagccggggacaaataacacataatccaaggata 237  Q
    |||| |||||||||||||| |||||||||    ||||||||| ||||||| |||| ||| || || || || || |||||||||||||||| ||| ||||    
T  46596498 gaagaaaatgttatggaacaattgagagagtcagtaagcttactgattgatatcaaattaaaaggacaaccaggtacaaataacacataattcaatgata 46596597  T
Q  238 gagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaacggtaa 303  Q
    ||||||| | |||||| || | ||||||||||||||| || ||||||||| ||||||||| |||||    
T  46596598 gagatgatagaggtgatgcctgaccaataccagtaacttgtgccttagaaccattagcaagggtaa 46596663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 87 - 298
Target Start/End: Complemental strand, 37074392 - 37074181
Alignment:
Q  87 cctgctccaattgtatttccggtactttggtcttgtataaggagagaaccagaagtaaatgttatggaacgattgagagaacatgtaagcttaatgattg 186  Q
    |||| ||||||||| ||||| ||| || ||||||||||||||| |||  |  ||| ||||||||| |||| |||||||||    ||||| ||| ||||||    
T  37074392 cctgttccaattgtctttcccgtatttcggtcttgtataaggaaagagtcgaaagaaaatgttatagaacaattgagagattgagtaagtttagtgattg 37074293  T
Q  187 aaatcatattgaaggggcagccggggacaaataacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttaga 286  Q
    | |||| ||| || || |  |  || |  ||||||||||||| ||| ||||||||||  | ||| ||||||| ||||||||||||||| || ||||||||    
T  37074292 agatcaaattaaaaggacttctaggtatgaataacacataattcaatgatagagatggcagaggagaagcttgaccaataccagtaacttgtgccttaga 37074193  T
Q  287 atcattagcaac 298  Q
    ||||||||||||    
T  37074192 atcattagcaac 37074181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 108 - 258
Target Start/End: Original strand, 7567756 - 7567905
Alignment:
Q  108 gtactttggtcttgtataaggagagaaccagaagtaaatgttatggaacgattgagagaacatgtaagcttaatgattgaaatcatattgaaggggcagc 207  Q
    ||||||||||||||||||| || |||  || |||||||||| ||||||| |||||||||| | ||||| |||  ||||||||||| ||  ||||||||      
T  7567756 gtactttggtcttgtataaagaaagagtcataagtaaatgt-atggaacaattgagagaataagtaagtttacagattgaaatcaaatcaaaggggcact 7567854  T
Q  208 cggggacaaataacacataatccaaggatagagatgaaaaaggtgaagctt 258  Q
    | || ||||||||||  ||||| |||||||||||||  |||||||||||||    
T  7567855 caggtacaaataacatgtaatctaaggatagagatggcaaaggtgaagctt 7567905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 303
Target Start/End: Complemental strand, 6679525 - 6679360
Alignment:
Q  138 gaagtaaatgttatggaacgattgagagaacatgtaagcttaatgattgaaatcatattgaaggggcagccggggacaaataacacataatccaaggata 237  Q
    |||| |||||||||||||| |||||||||     |||||||| ||||||| |||| ||| || || || || || |||||||||||||||| ||| ||||    
T  6679525 gaagaaaatgttatggaacaattgagagagtcaataagcttactgattgatatcaaattaaaaggacaaccaggtacaaataacacataattcaatgata 6679426  T
Q  238 gagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaacggtaa 303  Q
    ||||||  | |||||| || | ||||| ||||||||| || ||||||||| ||||||||| |||||    
T  6679425 gagatggtagaggtgaggcctgaccaaaaccagtaacttgtgccttagaaccattagcaagggtaa 6679360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 303
Target Start/End: Original strand, 22505430 - 22505595
Alignment:
Q  138 gaagtaaatgttatggaacgattgagagaacatgtaagcttaatgattgaaatcatattgaaggggcagccggggacaaataacacataatccaaggata 237  Q
    |||| |||||||||||||| |||||||||  | ||||||||| ||||||| |||| ||| || || || || || ||||||||||||||||  || ||||    
T  22505430 gaagaaaatgttatggaacaattgagagagtaagtaagcttactgattgatatcaaattaaaaggacaaccaggtacaaataacacataattaaatgata 22505529  T
Q  238 gagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaacggtaa 303  Q
    ||||||  | |||||| |  | |||||||| |||||| || ||||||||| ||||||||| |||||    
T  22505530 gagatggtagaggtgatgtctgaccaatactagtaacttgtgccttagaaccattagcaagggtaa 22505595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 303
Target Start/End: Complemental strand, 50959997 - 50959907
Alignment:
Q  213 acaaataacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaacggtaa 303  Q
    |||||||||||||||| ||| ||||||||||  | |||||| || | ||||||||||||||| || ||||||||| ||||||||| |||||    
T  50959997 acaaataacacataattcaatgatagagatggcagaggtgaggcctgaccaataccagtaacttgtgccttagaaccattagcaagggtaa 50959907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 14 - 297
Target Start/End: Complemental strand, 36998369 - 36998094
Alignment:
Q  14 atatttggagatgcagaaacattacatacaattggtgtaggtgattgaaggtaataga--ccttgttgttcacaacctgctccaattgtatttccggtac 111  Q
    |||| |||||||||| ||||||| |||||| |||||| |||||||| ||||||| |||  ||||||  |||| | ||||||||||||  |||||| ||||    
T  36998369 atatctggagatgcataaacattgcatacagttggtgaaggtgattcaaggtaacagagaccttgtcattcagagcctgctccaatttgatttcctgtac 36998270  T
Q  112 tttggtcttgtataaggagagaaccagaagtaaatgttatggaacgattgagagaacatgtaagcttaatgattgaaatcatattgaaggggcagccggg 211  Q
    ||||||||| ||||| ||||||       |||||||||||  ||| |||||||||||  |||||| || |||||||||||| |||||| |||||||| ||    
T  36998269 tttggtcttttataaagagagat------gtaaatgttataaaacaattgagagaacgagtaagcctactgattgaaatcaaattgaaagggcagccagg 36998176  T
Q  212 gacaaataacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaa 297  Q
     |||||||||||||||| ||||| ||||||||  |  ||||||||||    |||||||||||| || ||||||||| |||||||||    
T  36998175 tacaaataacacataatgcaagggtagagatggcaggggtgaagctt----aataccagtaacttgtgccttagaaccattagcaa 36998094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 138 - 303
Target Start/End: Complemental strand, 43734299 - 43734134
Alignment:
Q  138 gaagtaaatgttatggaacgattgagagaacatgtaagcttaatgattgaaatcatattgaaggggcagccggggacaaataacacataatccaaggata 237  Q
    |||| ||||||||| |||| |||||||||    ||||||||| ||||||| |||| ||| || || || || || |||||||||||||||| ||| ||||    
T  43734299 gaagaaaatgttatagaacaattgagagagtcagtaagcttactgattgatatcaaattaaaaggacaaccaggtacaaataacacataattcaatgata 43734200  T
Q  238 gagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaacggtaa 303  Q
    ||||||  | |||||| || | ||||||||||||||| || ||||||||| ||||||||| |||||    
T  43734199 gagatggtagaggtgaggcctgaccaataccagtaacttgtgccttagaaccattagcaagggtaa 43734134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 87 - 298
Target Start/End: Complemental strand, 36498153 - 36497942
Alignment:
Q  87 cctgctccaattgtatttccggtactttggtcttgtataaggagagaaccagaagtaaatgttatggaacgattgagagaacatgtaagcttaatgattg 186  Q
    |||| ||||||||| ||||| |||||| ||||||||||||||| |||| | |||| ||||||||| |||| |||||||||    ||||| ||| ||||||    
T  36498153 cctgttccaattgtctttcccgtacttcggtcttgtataaggaaagaatcggaagaaaatgttatagaacaattgagagattgagtaagtttactgattg 36498054  T
Q  187 aaatcatattgaaggggcagccggggacaaataacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttaga 286  Q
    | |||| ||| || || |  || |  |  | ||||||||||| ||||||||||||||  | ||| ||||||| ||||||||||||||| || ||||||||    
T  36498053 agatcaaattaaaaggacttccagttatgagtaacacataattcaaggatagagatggcagaggagaagcttgaccaataccagtaacttgtgccttaga 36497954  T
Q  287 atcattagcaac 298  Q
    | ||||||||||    
T  36497953 accattagcaac 36497942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 303
Target Start/End: Complemental strand, 38503611 - 38503446
Alignment:
Q  138 gaagtaaatgttatggaacgattgagagaacatgtaagcttaatgattgaaatcatattgaaggggcagccggggacaaataacacataatccaaggata 237  Q
    |||| |||||||||||||| |||||||||    ||||||||| ||||||| |||| ||| || || || || || |||||||||||||||| ||| ||||    
T  38503611 gaagaaaatgttatggaacaattgagagagtcagtaagcttactgattgatatcaaattaaaaggacaaccaggtacaaataacacataattcaatgata 38503512  T
Q  238 gagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaacggtaa 303  Q
    ||||||  | |||||| || | ||||||||||||||| || ||||||||| ||||||||| |||||    
T  38503511 gagatggtagaggtgaggcctgaccaataccagtaacttgtgccttagaaccattagcaagggtaa 38503446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 297
Target Start/End: Original strand, 32666011 - 32666092
Alignment:
Q  216 aataacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaa 297  Q
    |||| ||||| || ||||| ||||||||  ||||||||||||| ||||||||||||||| || | ||||||| |||||||||    
T  32666011 aataccacatgattcaagggtagagatggcaaaggtgaagcttgaccaataccagtaacttgtgacttagaagcattagcaa 32666092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 138 - 303
Target Start/End: Complemental strand, 19008 - 18843
Alignment:
Q  138 gaagtaaatgttatggaacgattgagagaacatgtaagcttaatgattgaaatcatattgaaggggcagccggggacaaataacacataatccaaggata 237  Q
    |||| |||||||||||||| |||||||||    ||||||||| ||||||| |||| ||| || || || || || |||||||||||||||| ||| ||||    
T  19008 gaagaaaatgttatggaacaattgagagagtcagtaagcttactgattgatatcaaattaaaaggacaaccaggtacaaataacacataattcaatgata 18909  T
Q  238 gagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaacggtaa 303  Q
    ||||||  | |||||| || | ||||||||||||||| || |||||||||  |||||||| |||||    
T  18908 gagatggcagaggtgaggcctgaccaataccagtaacttgtgccttagaacaattagcaagggtaa 18843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 138 - 303
Target Start/End: Complemental strand, 21292394 - 21292229
Alignment:
Q  138 gaagtaaatgttatggaacgattgagagaacatgtaagcttaatgattgaaatcatattgaaggggcagccggggacaaataacacataatccaaggata 237  Q
    |||| |||||||||||||| |||||||||    ||||||||| ||||||| |||| ||| || || || || || |||||||||||||||| ||| ||||    
T  21292394 gaagaaaatgttatggaacaattgagagagtcagtaagcttactgattgatatcaaattaaaaggacaaccaggtacaaataacacataattcaatgata 21292295  T
Q  238 gagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaacggtaa 303  Q
     |||||  |  ||||| || | ||||||||||||||| ||  |||||||| ||||||||| |||||    
T  21292294 aagatggcaggggtgaggcctgaccaataccagtaacttgttccttagaaccattagcaagggtaa 21292229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 296
Target Start/End: Original strand, 42360000 - 42360204
Alignment:
Q  92 tccaattgtatttccggtactttggtcttgtataaggagagaaccagaagtaaatgttatggaacgattgagagaacatgtaagcttaatgattgaaatc 191  Q
    ||||||||| ||||| |||||| ||||||||||||||| |||  |||||| |||||||||||||| |||||||||    || || ||| ||||||| |||    
T  42360000 tccaattgtctttcccgtacttcggtcttgtataaggaaagagtcagaagaaaatgttatggaacaattgagagattgagtgagtttactgattgagatc 42360099  T
Q  192 atattgaaggggcagccggggacaaataacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcat 291  Q
    | ||| || || |  || |  |  ||||||||||||| ||| ||||||||||  | ||| ||||||| ||||||||||||||| || |||||| || |||    
T  42360100 aaattaaaaggacttccagatatgaataacacataattcaatgatagagatggcagaggagaagcttgaccaataccagtaacttgtgccttataaccat 42360199  T
Q  292 tagca 296  Q
    |||||    
T  42360200 tagca 42360204  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 87 - 303
Target Start/End: Original strand, 37980526 - 37980742
Alignment:
Q  87 cctgctccaattgtatttccggtactttggtcttgtataaggagagaaccagaagtaaatgttatggaacgattgagagaacatgtaagcttaatgattg 186  Q
    |||| ||||||||| ||||| |||||| ||||||||||||||| |||  | |||| ||||||||| |||| |||||||||    ||||| ||| | ||||    
T  37980526 cctgttccaattgtctttcccgtacttcggtcttgtataaggaaagagtcggaagaaaatgttatagaacaattgagagattgagtaagtttactaattg 37980625  T
Q  187 aaatcatattgaaggggcagccggggacaaataacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttaga 286  Q
    | |||| ||| || || |  |  || |  ||||||||||||| ||| ||||||||||  | ||| ||||||| ||||||||||||||  || ||||||||    
T  37980626 atatcaaattaaaaggacttctaggtatgaataacacataattcaatgatagagatggcagaggagaagcttgaccaataccagtaaattgtgccttaga 37980725  T
Q  287 atcattagcaacggtaa 303  Q
    | |||||||||| ||||    
T  37980726 accattagcaacagtaa 37980742  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 108 - 258
Target Start/End: Complemental strand, 8983624 - 8983475
Alignment:
Q  108 gtactttggtcttgtataaggagagaaccagaagtaaatgttatggaacgattgagagaacatgtaagcttaatgattgaaatcatattgaaggggcagc 207  Q
    ||||||||||||||||||| || |||  || |||||||||  ||||||| |||||||||| | ||||| |||  ||||||||||| ||  ||||||||      
T  8983624 gtactttggtcttgtataaagaaagagtcataagtaaatgc-atggaacaattgagagaataagtaagtttacagattgaaatcaaatcaaaggggcact 8983526  T
Q  208 cggggacaaataacacataatccaaggatagagatgaaaaaggtgaagctt 258  Q
    | || ||||||||||  ||||| |||||||||||||  |||||||||||||    
T  8983525 caggtacaaataacatgtaatctaaggatagagatggcaaaggtgaagctt 8983475  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 303
Target Start/End: Original strand, 45187213 - 45187300
Alignment:
Q  216 aataacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaacggtaa 303  Q
    |||||||| |||| ||| ||||||||||  | ||| ||||||| ||||||||||||||| || ||||||||| |||||||||| ||||    
T  45187213 aataacacctaattcaatgatagagatggcagaggagaagcttgaccaataccagtaacttgtgccttagaaccattagcaacagtaa 45187300  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 297
Target Start/End: Complemental strand, 6998093 - 6997934
Alignment:
Q  138 gaagtaaatgttatggaacgattgagagaacatgtaagcttaatgattgaaatcatattgaaggggcagccggggacaaataacacataatccaaggata 237  Q
    |||| |||||||||| ||| |||||||||    ||||||||| | ||||| |||| ||| || || |  || || |||||||| ||||| | ||| ||||    
T  6998093 gaagaaaatgttatgcaacaattgagagagtcagtaagcttactaattgatatcaaattaaaaggacgaccaggtacaaataaaacatagttcaatgata 6997994  T
Q  238 gagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaa 297  Q
    ||||||  | |||||| || | ||||||||||||||| || ||||||||| |||||||||    
T  6997993 gagatggcagaggtgaggcctgaccaataccagtaacttgtgccttagaaccattagcaa 6997934  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 303
Target Start/End: Original strand, 44266093 - 44266256
Alignment:
Q  138 gaagtaaatgttatggaacgattgagagaa-catgtaagcttaatgattgaaatcatattgaaggggcagccggggacaaataacacataatccaaggat 236  Q
    |||| |||||||||||||| |||||||||  ||| |||||||| ||||||| |||  ||| || || || || || ||||||||||||  || |||  ||    
T  44266093 gaagaaaatgttatggaacaattgagagagtcat-taagcttactgattgatatcgaattaaaaggacaaccaggtacaaataacaca--attcaataat 44266189  T
Q  237 agagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaacggtaa 303  Q
    |||||||  | |||||| || | ||||||||||||||| || ||||||||| ||||||||| |||||    
T  44266190 agagatggcagaggtgaggcctgaccaataccagtaacttgtgccttagaaccattagcaagggtaa 44266256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 297
Target Start/End: Complemental strand, 35023605 - 35023526
Alignment:
Q  218 taacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaa 297  Q
    ||||||||||| ||  ||||||||||| ||||||||| ||| ||||||||||||||| || ||||| ||| |||||||||    
T  35023605 taacacataattcagagatagagatgacaaaggtgaaacttgaccaataccagtaacttgtgccttggaaccattagcaa 35023526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 52982024 - 52982076
Alignment:
Q  215 aaataacacataatccaaggatagagatgaaaaaggtgaagctttaccaatac 267  Q
    |||||||||||||| |||||||| |||||  | ||||||||||| ||||||||    
T  52982024 aaataacacataattcaaggataaagatggcagaggtgaagcttgaccaatac 52982076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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