View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6646_low_12 (Length: 324)
Name: NF6646_low_12
Description: NF6646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6646_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 7 - 308
Target Start/End: Complemental strand, 51815215 - 51814898
Alignment:
| Q |
7 |
tcgaagaatattattttcatttagaaaccaaatgaaaaacgatgaccaagatgatatttttaattg-------agac--------agaattgaaaaaa-g |
90 |
Q |
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| T |
51815215 |
tcgaaaaatattattttcatttagaaaccaaatgaaaaacgatgaccaagatgatatttttaatttttcgtttagattatgtttgagaattgaaaaaaag |
51815116 |
T |
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| Q |
91 |
aagaaatcgatctatgcaattgagatttgtgatatcataattcgtaattccttcttgggattggcataaaggaaaagtacatcaaaatacatcttctctc |
190 |
Q |
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| T |
51815115 |
aacaaatcgatctatgcaattgagatttgtgatatcataattcgtaattccttcttgggattggcataaaggaaaagtacatcaaaatacatcttctctc |
51815016 |
T |
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| Q |
191 |
tgattatttctcatcaaaatttttgttttggttacgatcgagctatctatcttaattctcatataattaaatataacatacagttaatcatagtatagcc |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
51815015 |
tgattatttctcatcaaaatttttgttttggttacgatcgagctatctatcttaattctcatataattaaatataacatacagttaaccatagtatagcc |
51814916 |
T |
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| Q |
291 |
gtatattatgtacttaat |
308 |
Q |
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|||||||||||||||||| |
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| T |
51814915 |
gtatattatgtacttaat |
51814898 |
T |
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