View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6646_low_2 (Length: 706)
Name: NF6646_low_2
Description: NF6646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6646_low_2 |
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| [»] scaffold0331 (2 HSPs) |
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| [»] scaffold0164 (2 HSPs) |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 227 - 687
Target Start/End: Original strand, 7205533 - 7205985
Alignment:
| Q |
227 |
tagtgatgaattaatagagttcaaagctcaattaacaaaattaaaaggcaaatgattcaggttgtagcttgctgattgacacacatgccatgatcaatta |
326 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||| | ||||| ||||||||||||||||||||||||||| |
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| T |
7205533 |
tagtgatgaattaatagagttcaaagatcaattaacaaaattaaaaggcaaatgattaaagttgcaacttgcagattgacacacatgccatgatcaatta |
7205632 |
T |
|
| Q |
327 |
acagaactaagaagtgagaaacccaacggcggaacccatttgccatgattcaattaacaaaacaaaataagcatattaacaaaactcatttgcacagaac |
426 |
Q |
| |
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|||||||||||||||||||||||||| | | ||||| |||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||| ||| |
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| T |
7205633 |
acagaactaagaagtgagaaacccaatgacagaacctatttgccatgattcaattaacagaacaaaataagcatattaacagaacccatttgcacataac |
7205732 |
T |
|
| Q |
427 |
ccttctttctcataacttaacccatttgccatgattcatttaacagagcaaaattaatac-aaaataaagttagaacttataagaatcacaagacatatt |
525 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||| ||||||||||| ||||||| |
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| T |
7205733 |
ccttctttctcataacttaacccatttgccatgattcaattaacagagcaaaattagtacaaaaataaagttagaacttagaagaatcacaacacatatt |
7205832 |
T |
|
| Q |
526 |
catgtacagagcaagattcattcaatgaacagtacaagattaaatgcacgtcaatattttacacttaaccattattaagcaaagccccaacaagaaaaac |
625 |
Q |
| |
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|||||||| | ||||||||||||| ||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||| |||||||| |||||| |
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| T |
7205833 |
catgtacaaacaaagattcattcaaggaacagtacaagattaaatgcacatcatagttttacacttaaacattattaagcaaagacccaacaaaaaaaac |
7205932 |
T |
|
| Q |
626 |
ctaaacttgagcattgttaaacataaacccagcaataaaaatgaaaagtatcacaataataa |
687 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
7205933 |
ctaaa---------agttaaacataaacccagcaataaaaatgaaaagtattgcaataataa |
7205985 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0331 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: scaffold0331
Description:
Target: scaffold0331; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 190 - 537
Target Start/End: Complemental strand, 1140 - 792
Alignment:
| Q |
190 |
tagttaatgtgtgctaaatgatctataaaatccaaactagtgatgaattaatagagttcaaagctcaattaacaaaattaaaaggcaaatgattcaggtt |
289 |
Q |
| |
|
|||||||| |||| ||||||||||||| |||||||||||||||||| ||| ||||||| |||| |||||||||||||| | |||||| |||||||||||| |
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| T |
1140 |
tagttaatctgtgataaatgatctatagaatccaaactagtgatgacttactagagttgaaagatcaattaacaaaatcagaaggcagatgattcaggtt |
1041 |
T |
|
| Q |
290 |
gtagcttgctgattgacacacatgccatgatcaattaacagaactaagaagtgagaaacccaacggcggaacccatttgccatgattcaattaacaaaac |
389 |
Q |
| |
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||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||| |
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| T |
1040 |
gtagcttgcagactgacaaacatgccatgatcaattaacagaactaagaagtgagaaacccaacaacggaacctatttgccatgattcaattaccaaaac |
941 |
T |
|
| Q |
390 |
aaaataagcatattaacaaaactcatttgcacagaacccttctttctcataacttaacccatttgccatgattcatttaacagagcaaaattaatac-aa |
488 |
Q |
| |
|
|||||||||||||||||| ||| |||||||| ||||||| |||||||||||||| |||||||||||||||||||| ||||| || | |||||||| || |
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| T |
940 |
aaaataagcatattaacagaacccatttgcatagaacccctctttctcataactaaacccatttgccatgattcaattaaccgaaggatattaatacaaa |
841 |
T |
|
| Q |
489 |
aataaagttagaacttataagaatcacaagacatattcatgtacagagc |
537 |
Q |
| |
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||| || |||||||||| |||||||| || ||||||||||||||||||| |
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| T |
840 |
aatcaaattagaacttagaagaatcataacacatattcatgtacagagc |
792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0331; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 519 - 665
Target Start/End: Complemental strand, 787 - 641
Alignment:
| Q |
519 |
acatattcatgtacagagcaagattcattcaatgaacagtacaagattaaatgcacgtcaatattttacacttaaccattattaagcaaagccccaacaa |
618 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| || ||||||||||||| ||| ||||||||||||| |||| | |||||||| |||||||| |
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| T |
787 |
acatattcatgtccagagcaagattcattcaatgaacaggaccagattaaatgcacatcacaattttacacttaaacattgtcaagcaaagacccaacaa |
688 |
T |
|
| Q |
619 |
gaaaaacctaaacttgagcattgttaaacataaacccagcaataaaa |
665 |
Q |
| |
|
||||||||||||||||| |||| ||||||||| |||||||||||||| |
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| T |
687 |
gaaaaacctaaacttgatcattattaaacatagacccagcaataaaa |
641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 179; Significance: 3e-96; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 364 - 672
Target Start/End: Complemental strand, 48009876 - 48009560
Alignment:
| Q |
364 |
atttgccatgattcaattaacaaaacaaaataagcatattaacaaaactcatttgcacagaacccttctttctcataacttaacccatttgccatgattc |
463 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
48009876 |
atttgtcatgattcaattaacataacaaaataagcatattaacagaactcgtttgcacagaacccttatttctcataacttagcccatttgccatgattc |
48009777 |
T |
|
| Q |
464 |
atttaacagagcaaaattaatac-aaaataaagttagaacttataagaatcacaa-------gacatattcatgtacagagcaagattcattcaatgaac |
555 |
Q |
| |
|
| |||||| | |||||||||||| |||||||| ||| |||||| ||||||||||| ||||||||||| |||||||||| |||||||||||||| |
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| T |
48009776 |
acttaacataacaaaattaatacaaaaataaaattataacttagaagaatcacaacacatatgacatattcatttacagagcaaaattcattcaatgaag |
48009677 |
T |
|
| Q |
556 |
agtacaagattaaatgcacgtcaatattttacacttaaccattattaagcaaagccccaacaagaaaaacctaaacttgagcattgttaaacataaaccc |
655 |
Q |
| |
|
|| |||||||||||| ||| ||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||| |||| |
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| T |
48009676 |
aggacaagattaaatccacatcacaattttacacttaaacattattaagcaaagacccaacaagaaaaaactaaacttgagcattattaaacatagaccc |
48009577 |
T |
|
| Q |
656 |
agcaataaaaatgaaaa |
672 |
Q |
| |
|
| ||||||||||||||| |
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|
| T |
48009576 |
aacaataaaaatgaaaa |
48009560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 53929261 - 53929203
Alignment:
| Q |
1 |
taaaaatagatagcagttagtggagataaaactaattaaattaggggtccactttaaac |
59 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
53929261 |
taaaaatagatagcagttagtggagatcaaactaattaaattaggggtccactttaaac |
53929203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 81 - 184
Target Start/End: Complemental strand, 53929115 - 53929011
Alignment:
| Q |
81 |
ctatactgctaagatttagaattagatcaaagatggagaaaaacccactcagatac-aaggttgtgcttagtaaacagtagacaagaggaaaacagtgca |
179 |
Q |
| |
|
||||||||||||||||||||| || || ||||| ||| ||||||||||| ||| || |||| |||||||||||||| | |||||||||||||||||||| |
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|
| T |
53929115 |
ctatactgctaagatttagaagtaaatgaaagagggataaaaacccacttagacaccaaggatgtgcttagtaaaccttcgacaagaggaaaacagtgca |
53929016 |
T |
|
| Q |
180 |
atgtg |
184 |
Q |
| |
|
||||| |
|
|
| T |
53929015 |
atgtg |
53929011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 519 - 635
Target Start/End: Original strand, 22357 - 22473
Alignment:
| Q |
519 |
acatattcatgtacagagcaagattcattcaatgaacagtacaagattaaatgcacgtcaatattttacacttaaccattattaagcaaagccccaacaa |
618 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||| ||| |||||||||||||||| ||| ||||||||||||| |||||| |||||||| |||||||| |
|
|
| T |
22357 |
acatatttatgtacagatcaagattcattcaatgagcaggacaagattaaatgcacatcacaattttacacttaaacattatcaagcaaagacccaacaa |
22456 |
T |
|
| Q |
619 |
gaaaaacctaaacttga |
635 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
22457 |
gaaaaacctaaacttga |
22473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 413 - 455
Target Start/End: Original strand, 22234 - 22276
Alignment:
| Q |
413 |
catttgcacagaacccttctttctcataacttaacccatttgc |
455 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22234 |
cattttcacagaacccttctttctcacaacttaacccatttgc |
22276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 190 - 281
Target Start/End: Original strand, 7403157 - 7403248
Alignment:
| Q |
190 |
tagttaatgtgtgctaaatgatctataaaatccaaactagtgatgaattaatagagttcaaagctcaattaacaaaattaaaaggcaaatga |
281 |
Q |
| |
|
|||||||| |||| ||||||||||||| |||||||||||||||||| ||| ||||||| |||| |||||||||||||| | ||||||||||| |
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|
| T |
7403157 |
tagttaatctgtgataaatgatctatagaatccaaactagtgatgacttactagagttgaaagatcaattaacaaaatcagaaggcaaatga |
7403248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 85497 - 85442
Alignment:
| Q |
196 |
atgtgtgctaaatgatctataaaatccaaactagtgatgaattaatagagttcaaag |
252 |
Q |
| |
|
|||||||||||||||||| ||||||| ||| ||||||||||| ||||| ||||||| |
|
|
| T |
85497 |
atgtgtgctaaatgatctccaaaatcc-aacaagtgatgaattcatagatttcaaag |
85442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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