View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6646_low_26 (Length: 229)
Name: NF6646_low_26
Description: NF6646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6646_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 9 - 213
Target Start/End: Complemental strand, 42466012 - 42465808
Alignment:
| Q |
9 |
aggagcagagagagtagatgataggagaaagccaactacttgtcaagattaatatgagaagatggattagaaagtaaaatagggaatggaagtgtaaata |
108 |
Q |
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| T |
42466012 |
aggaacagagggagtatatgataggagaaagccaattacttgtcaagattaatatgagaagatggattagaaagtaaaatagggaatggaagtgtaaata |
42465913 |
T |
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| Q |
109 |
gttggatgatattatataaccttcacattttctccaattctagcattcttgtcaacaattgctcttttgatatgggagtttctgccaataccaattggta |
208 |
Q |
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| T |
42465912 |
gttggatgatattatataaccttcacattttctccaattctagcattcttgtcaacaattgctcttttgatatgggagtttctgccaataccaattggta |
42465813 |
T |
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| Q |
209 |
cactg |
213 |
Q |
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||||| |
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| T |
42465812 |
cactg |
42465808 |
T |
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Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 121 - 213
Target Start/End: Complemental strand, 37079623 - 37079531
Alignment:
| Q |
121 |
tatataaccttcacattttctccaattctagcattcttgtcaacaattgctcttttgatatgggagtttctgccaataccaattggtacactg |
213 |
Q |
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| T |
37079623 |
tatataaccttcacatcgtctccaattctagcattcttgtcaataattgcccttttgatatgagaattcttgccaataccaatcggaacactg |
37079531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 213
Target Start/End: Original strand, 4492231 - 4492300
Alignment:
| Q |
144 |
aattctagcattcttgtcaacaattgctcttttgatatgggagtttctgccaataccaattggtacactg |
213 |
Q |
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| T |
4492231 |
aattctagcattcgtgtcaataattgcccttttgatatgagaatttttgccaatgccaatcggaacactg |
4492300 |
T |
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