View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6646_low_5 (Length: 463)
Name: NF6646_low_5
Description: NF6646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6646_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 16 - 447
Target Start/End: Complemental strand, 54115789 - 54115358
Alignment:
| Q |
16 |
atgagacatgagcacttaagataattatatcatttattaacttcccctaactgaacacagagaattgtcaatcgtatcgaacattgattccttacacaga |
115 |
Q |
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| T |
54115789 |
atgagacatgagcacttaagataattatatcatttattaacttcccctaactgaacacagagaattgtcaatcgtatcgaacatggattccttacacaga |
54115690 |
T |
|
| Q |
116 |
tttcttcatgtgcaatgtacatgttctcaaaaactagtttaatacaaaagggaattacctagttagtgagtattcatagaagttaagattaatacctatg |
215 |
Q |
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| T |
54115689 |
tttcttcatgtgcaatgtacatgttctcaaaaactagtttaatacaaaagggaattacctagttagtgagtattcatagaagttaagattaatacctatg |
54115590 |
T |
|
| Q |
216 |
tcaggactctgaaggtacatatccttgacccgatgaggtgataaactctcaaagaactgaacttgatcgctttcttcacatgttttgttctcttttggag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54115589 |
tcaggactctgaaggtacatatccttgacccgatgaggtgataaactctcaaagaactgaacttgatcgctttcttcacatgttttgttctcttttggag |
54115490 |
T |
|
| Q |
316 |
actcaacttctgtgtctgcctctggctctgcatgatttcctgcaggaactgatgattgcttgcgctttgaacgagctcttctgttctggaaccaattata |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
54115489 |
actcaacttctgtgtctgcctctggctctgcatgatttcctgcaggaactgatgattgcttgcgctttgaacgtgctcttctgttctggaaccaattata |
54115390 |
T |
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| Q |
416 |
aacattagtctcggatatttgaccgtgttgcc |
447 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
54115389 |
aacattagtctcggatatttgaccgtgttgcc |
54115358 |
T |
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