View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6646_low_6 (Length: 450)
Name: NF6646_low_6
Description: NF6646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6646_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 20 - 364
Target Start/End: Complemental strand, 9186209 - 9185882
Alignment:
| Q |
20 |
aatctgttgatgcataattcatgtccctcttttcttctttttcatattgttagctgaaaacctgaggaaaaataaatttaggaaatttcgagttttcatg |
119 |
Q |
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| T |
9186209 |
aatctgttgatgcataattcatgtccctcttttcttctttttcatattgttagctgaaaacctgaggaaaaataaatttaggaaatttagagttttcatg |
9186110 |
T |
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| Q |
120 |
tatcacttaataaacttcctcacgccttgtattatttaaatttatattgggtttaggttattcttagaaaatcaactttacaagtgaacgatgaaattct |
219 |
Q |
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| T |
9186109 |
tatcacttaataaacttcctcacgccttgtattatttaaatttatattgggtttaggttattcttagaaaatcaacttgtaaagtgaacgatgaaattct |
9186010 |
T |
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| Q |
220 |
ttaaaattctttttacactagaaatcttttcggtatgagatttagaatatgacgacttctggtggcacttggatagaatttaagaaaggggcaaagtcaa |
319 |
Q |
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| T |
9186009 |
ttaaaattctttttacattagaaatcttttcggtatgagatttagaa-----------------gcacttggatagaatttaagaaaggggcaaagtcaa |
9185927 |
T |
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| Q |
320 |
ttttttatgtgtgctatactatgtgtttttagtccacaccaccat |
364 |
Q |
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| T |
9185926 |
ttttttatgtgtgctatactatgtgtttttaatccacaccaccat |
9185882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 386 - 440
Target Start/End: Complemental strand, 9185645 - 9185591
Alignment:
| Q |
386 |
ggttagatgttattttatgtaagccagtatcaataatacttgcttgctgcctttg |
440 |
Q |
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| T |
9185645 |
ggttagatgttattttatgtaagccagtatcaatattacttgcttgctgcctttg |
9185591 |
T |
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