View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6646_low_8 (Length: 380)
Name: NF6646_low_8
Description: NF6646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6646_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 2230696 - 2230986
Alignment:
| Q |
18 |
aatagtgtatcacataatataacaaacatatgcttgttatattacataacttgatacatgttgtgtagctttgaacttgataacttaaggtctgagaagg |
117 |
Q |
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| T |
2230696 |
aatagtgtatcacataatataacaaacatatgcttgttatattacataacttgatacttgttgtgtagctttgaacttgataacttaaggtctgagaagg |
2230795 |
T |
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| Q |
118 |
aaaataagtaatagccagtagtaaagatatgtctacctctctctcatgggaacacacgggcaattccaaaatccttgcgcagcctcagcagctttatcgt |
217 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2230796 |
aaaataagtaatagccagtagtaaagatgtgtctacctctctctcatgggaacacacgggcaattccaaaatccttgcgcagcctcagcagctttatcgt |
2230895 |
T |
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| Q |
218 |
cgtaatgcctaaaacagagattttgagcgtaagcttaggaaattcagaagacataaaacacttatcaaacctatgcatgcaaccactctgcc |
309 |
Q |
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| T |
2230896 |
cgtaatgcctaaaacagagattttgagcgtaagcttagg-aattcagaagacataaaacacttatcaaacctatgtatgcaaccacactgcc |
2230986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 299 - 380
Target Start/End: Complemental strand, 2231249 - 2231168
Alignment:
| Q |
299 |
accactctgcccttgccggtaaatacttgttgttttaccttgttgtagcgttattaaatagcagctatagtgacgccttacc |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2231249 |
accactctgcccttgccggtaaatacttgttgttttaccttgttgtagtgttattaaatagcagctatagtgacgccttacc |
2231168 |
T |
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