View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6646_low_9 (Length: 365)

Name: NF6646_low_9
Description: NF6646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6646_low_9
NF6646_low_9
[»] chr7 (14 HSPs)
chr7 (1-353)||(7327714-7328066)
chr7 (60-353)||(7311481-7311774)
chr7 (276-353)||(7306602-7306679)
chr7 (164-309)||(20456085-20456230)
chr7 (253-302)||(21210846-21210895)
chr7 (257-309)||(20414456-20414508)
chr7 (246-296)||(22525580-22525630)
chr7 (246-292)||(22534240-22534286)
chr7 (158-207)||(20414570-20414619)
chr7 (164-211)||(21210756-21210803)
chr7 (3-44)||(7311394-7311435)
chr7 (159-192)||(22525511-22525544)
chr7 (162-194)||(21221220-21221252)
chr7 (167-199)||(22534315-22534347)
[»] scaffold0064 (1 HSPs)
scaffold0064 (253-301)||(23807-23855)
[»] chr4 (2 HSPs)
chr4 (245-292)||(2910627-2910674)
chr4 (252-296)||(11982095-11982139)
[»] chr6 (1 HSPs)
chr6 (173-201)||(6954876-6954904)


Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 7328066 - 7327714
Alignment:
Q  1 cggtccctagatgtagtgaaacaatcacaaattcattaataatactagcagtattggtaggaatccgattgcgtgccaaccagttaacagtgcaattaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7328066 cggtccctagatgtagtgaaacaatcacaaattcattaataatactagcagtattggtaggaatccgattgcgtgccaaccagttaacagtgcaattaaa 7327967  T
Q  101 ttgtacaccctcgtaaactctccaataagcaaagtctatctgaagaggcaaaacagctaaagtttgaatagttctccaaacattatcacccaaagtaaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  7327966 ttgtacaccctcgtaaactctccaataagcaaagtctatctgaagaggcaaaacagctaaagtttgaatagttttccaaacattatcacccaaagtaaaa 7327867  T
Q  201 atgctcacctcaaccttagggttgctaaaattgctattataatgcaaggctacaaccttataagtgttggttgaattatcataacaaaacacaaacctcc 300  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7327866 atgctcacctcaaccttaggattgctaaaattgctattataatgcaaggctacaaccttataagtgttggttgaattatcataacaaaacacaaacctcc 7327767  T
Q  301 aagaattccattcataattgaaatcatcgaaacaacctaatctatcagatatt 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7327766 aagaattccattcataattgaaatcatcgaaacaacctaatctatcagatatt 7327714  T

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Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 60 - 353
Target Start/End: Original strand, 7311481 - 7311774
Alignment:
Q  60 ggaatccgattgcgtgccaaccagttaacagtgcaattaaattgtacaccctcgtaaactctccaataagcaaagtctatctgaagaggcaaaacagcta 159  Q
    ||||||||||||||||||||||||||||| ||||| || ||||||||||| || || | |||||||||   | ||   | ||||||||||| || || ||    
T  7311481 ggaatccgattgcgtgccaaccagttaaccgtgcagttgaattgtacaccatcatacattctccaatagctatagagaagctgaagaggcacaaaagata 7311580  T
Q  160 aagtttgaatagttctccaaacattatcacccaaagtaaaaatgctcacctcaaccttagggttgctaaaattgctattataatgcaaggctacaacctt 259  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||   ||| || | | ||| | ||||||||||||||| ||||||||    
T  7311581 aagtttgtatagttctccaaacattatcacccaaagtgaaaatgctcacctcaaccacggggctgttgacatttccattataatgcaaggccacaacctt 7311680  T
Q  260 ataagtgttggttgaattatcataacaaaacacaaacctccaagaattccattcataattgaaatcatcgaaacaacctaatctatcagatatt 353  Q
    ||||  ||  ||||||||||||||||||||||| ||||||||||||||| || |||||| |||||||||||||| |||||| ||||||||||||    
T  7311681 ataatagtccgttgaattatcataacaaaacacgaacctccaagaattcgatccataatcgaaatcatcgaaactacctaacctatcagatatt 7311774  T

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Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 276 - 353
Target Start/End: Original strand, 7306602 - 7306679
Alignment:
Q  276 ttatcataacaaaacacaaacctccaagaattccattcataattgaaatcatcgaaacaacctaatctatcagatatt 353  Q
    ||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||| ||| ||||||||||||||    
T  7306602 ttatcataacaaaacacgaacctccaagaattcgatttataattgaaatcatcgaaacagcctgatctatcagatatt 7306679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 164 - 309
Target Start/End: Complemental strand, 20456230 - 20456085
Alignment:
Q  164 ttgaatagttctccaaacattatcacccaaagtaaaaatgctcacctcaaccttagggttgct-aaaattgctattataatgcaaggctacaaccttata 262  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||  | ||||| ||| ||  | ||||   || | | ||| |||||| |||||||||||    
T  20456230 ttgaatacttctccaaacattatcacccaaactaaaaatgctcattttaacctcaggttttttgaaaacatct-tcacaattcaaggccacaaccttata 20456132  T
Q  263 agtgttggttgaattatcataacaaaacacaaacctccaagaattcc 309  Q
     |||| ||||||||||||| |||||||||||||| ||||||| ||||    
T  20456131 tgtgtcggttgaattatcaaaacaaaacacaaacatccaagagttcc 20456085  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 302
Target Start/End: Original strand, 21210846 - 21210895
Alignment:
Q  253 caaccttataagtgttggttgaattatcataacaaaacacaaacctccaa 302  Q
    ||||||||||||||| |||| ||||||||||||||||||||||| |||||    
T  21210846 caaccttataagtgtcggttaaattatcataacaaaacacaaacttccaa 21210895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 257 - 309
Target Start/End: Complemental strand, 20414508 - 20414456
Alignment:
Q  257 cttataagtgttggttgaattatcataacaaaacacaaacctccaagaattcc 309  Q
    |||||||||||||||||||| |||||||| |||||||||| ||||||| ||||    
T  20414508 cttataagtgttggttgaatcatcataaccaaacacaaacatccaagagttcc 20414456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 22525580 - 22525630
Alignment:
Q  246 aaggctacaaccttataagtgttggttgaattatcataacaaaacacaaac 296  Q
    ||||||||||| ||||| |||| ||||||||||||||||| ||||||||||    
T  22525580 aaggctacaactttataggtgtcggttgaattatcataaccaaacacaaac 22525630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 22534286 - 22534240
Alignment:
Q  246 aaggctacaaccttataagtgttggttgaattatcataacaaaacac 292  Q
    ||||||||||||||||| |||| ||||||||||||||||| ||||||    
T  22534286 aaggctacaaccttataggtgtcggttgaattatcataaccaaacac 22534240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 20414619 - 20414570
Alignment:
Q  158 taaagtttgaatagttctccaaacattatcacccaaagtaaaaatgctca 207  Q
    |||| ||| |||| ||||||||||||||||||||||| ||||||||||||    
T  20414619 taaacttttaatacttctccaaacattatcacccaaactaaaaatgctca 20414570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 21210756 - 21210803
Alignment:
Q  164 ttgaatagttctccaaacattatcacccaaagtaaaaatgctcacctc 211  Q
    |||||||||| |||||| ||||||||| ||| ||||||||||||||||    
T  21210756 ttgaatagttttccaaatattatcacctaaactaaaaatgctcacctc 21210803  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 7311394 - 7311435
Alignment:
Q  3 gtccctagatgtagtgaaacaatcacaaattcattaataata 44  Q
    ||||||| ||||||||||| |||||||||||||| |||||||    
T  7311394 gtccctatatgtagtgaaataatcacaaattcataaataata 7311435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 22525511 - 22525544
Alignment:
Q  159 aaagtttgaatagttctccaaacattatcaccca 192  Q
    ||||||| ||||||||||||||||||||||||||    
T  22525511 aaagttttaatagttctccaaacattatcaccca 22525544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 21221220 - 21221252
Alignment:
Q  162 gtttgaatagttctccaaacattatcacccaaa 194  Q
    |||||||||||||||||||||||||||| ||||    
T  21221220 gtttgaatagttctccaaacattatcactcaaa 21221252  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 22534347 - 22534315
Alignment:
Q  167 aatagttctccaaacattatcacccaaagtaaa 199  Q
    ||||||||||||||||||||||||||| |||||    
T  22534347 aatagttctccaaacattatcacccaaggtaaa 22534315  T

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Target: scaffold0064 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 301
Target Start/End: Complemental strand, 23855 - 23807
Alignment:
Q  253 caaccttataagtgttggttgaattatcataacaaaacacaaacctcca 301  Q
    |||||||||||||||||||| |||| ||||||| |||||||||| ||||    
T  23855 caaccttataagtgttggttaaattctcataaccaaacacaaacttcca 23807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 292
Target Start/End: Complemental strand, 2910674 - 2910627
Alignment:
Q  245 caaggctacaaccttataagtgttggttgaattatcataacaaaacac 292  Q
    |||||| ||||||||||||||||  |||||||||||||||| ||||||    
T  2910674 caaggccacaaccttataagtgtgagttgaattatcataaccaaacac 2910627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 296
Target Start/End: Original strand, 11982095 - 11982139
Alignment:
Q  252 acaaccttataagtgttggttgaattatcataacaaaacacaaac 296  Q
    |||||||||||||||| | |||||||| |||||| ||||||||||    
T  11982095 acaaccttataagtgtcgcttgaattaacataaccaaacacaaac 11982139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 201
Target Start/End: Original strand, 6954876 - 6954904
Alignment:
Q  173 tctccaaacattatcacccaaagtaaaaa 201  Q
    |||||||||||||||||||||||||||||    
T  6954876 tctccaaacattatcacccaaagtaaaaa 6954904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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