View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6647_high_13 (Length: 260)
Name: NF6647_high_13
Description: NF6647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6647_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 259
Target Start/End: Complemental strand, 32687733 - 32687488
Alignment:
| Q |
14 |
atcatgaaatgaatattaataatgtattaattggtagcaatttaaattacgttgtatgattaaatatgatttaaattctcttaatatcaataagaatgct |
113 |
Q |
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| T |
32687733 |
atcatgaaatgaatattaataatgtattaattggtagcaatttaaattacgttgtagaattaaatatgatttaaattctcttaatatcaataagaatgct |
32687634 |
T |
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| Q |
114 |
cggcggagttggcgtaaactatatgatatttttaactaaataaaaatgtcatagcaacaataataatagtttatctaaaagaacaataataatcaatcac |
213 |
Q |
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| T |
32687633 |
cggcggagttggcgtaaactatatgatatttttaaccaaataaaaatgtcatagcaacaataataatagtttatctaaaagaacaacaataatcaatcac |
32687534 |
T |
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| Q |
214 |
tatgctttaagacatcattgtgcttacatgatcttattgaaaccaa |
259 |
Q |
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| T |
32687533 |
tatgctttaagacatcattgtgcttacatgatcttattgaaaccaa |
32687488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 32689048 - 32688976
Alignment:
| Q |
136 |
atgatatttttaactaaataaaaatgtcatagcaacaataataatagtttatctaaaagaacaataataatca |
208 |
Q |
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| T |
32689048 |
atgatatttttaaccaaataaaaatgtcataacaacaataattacagtatatctaaaagaaaaataataatca |
32688976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 26340617 - 26340552
Alignment:
| Q |
140 |
tatttttaactaaataaaaatgtcatagcaacaataataatagtttatctaaaagaacaataataat |
206 |
Q |
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| T |
26340617 |
tatttttaactaaataaaaatgtcata-caataataataattgtgtttctaaatgaaaaataataat |
26340552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 255
Target Start/End: Complemental strand, 32688920 - 32688866
Alignment:
| Q |
201 |
aataatcaatcactatgctttaagacatcattgtgcttacatgatcttattgaaa |
255 |
Q |
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||||||||||| || | |||||| | ||||||||||||||||||||||||||||| |
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| T |
32688920 |
aataatcaatcgctctactttaacatatcattgtgcttacatgatcttattgaaa |
32688866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 26288960 - 26289021
Alignment:
| Q |
143 |
ttttaactaaataaaaatgtcatagcaacaataataatagtttatctaaaagaacaataataat |
206 |
Q |
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||||||||||| |||||||||||| |||||||||||||||| | |||||| ||| ||||||||| |
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| T |
26288960 |
ttttaactaaacaaaaatgtcata-caacaataataatagtatttctaaatgaa-aataataat |
26289021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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