View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6647_high_16 (Length: 242)
Name: NF6647_high_16
Description: NF6647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6647_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 32687363 - 32687138
Alignment:
| Q |
1 |
tttatatttgacaatagattttcacactttaacatcttgaacttcaaatcaagacatcgtttaaatcattgtttgggagttttactttattccaattcta |
100 |
Q |
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| T |
32687363 |
tttatatttgacaatagattctcacactttaacatcttgaagttcaaatcaagacatcgtttaaatcattgtttgagagttttaccttattccaactcta |
32687264 |
T |
|
| Q |
101 |
aaaggtttaacaaaattaattttcactgttgtggtatgataataattttgtggattgtggtgataaaattcgatttaaaattatcaccaataacataaaa |
200 |
Q |
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| T |
32687263 |
aaaggtttaacaaaattaattttgactgttgtggtatgataataattctgtggattgcggcgataaaattcgatttaaaattatcaccaataacataaaa |
32687164 |
T |
|
| Q |
201 |
agttaagttaagtttatctatgatgt |
226 |
Q |
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||||||||||||||| ||||| |||| |
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| T |
32687163 |
agttaagttaagtttgtctataatgt |
32687138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 32688725 - 32688511
Alignment:
| Q |
13 |
aatagattttcacactttaacatcttgaacttcaaatcaagacatcgtttaaatcattgtttggg-agttttactttattccaattctaaaaggtttaac |
111 |
Q |
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|||||||| ||||| |||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
32688725 |
aatagattctcacattttaacatcttgaagtccaaatcaagacatcgtttaaatcattgtttggggagttttactttattccaactctaaaaggtttaac |
32688626 |
T |
|
| Q |
112 |
aaaattaattttcactgttgtggtatgataataattttgtggattgtggtgataaaattcgatttaaaattatcaccaataacataaaaagttaagttaa |
211 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
32688625 |
gaaattaattttgactattgtggtatgataataattttgtggattgtggtaataaacttcgatttaaaattatcatcaataacagaaaaagttaagttaa |
32688526 |
T |
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| Q |
212 |
gtttatctatgatgt |
226 |
Q |
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|||| |||||||||| |
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| T |
32688525 |
gtttgtctatgatgt |
32688511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 26285857 - 26285894
Alignment:
| Q |
172 |
gatttaaaattatcaccaataacataaaaagttaagtt |
209 |
Q |
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||||| |||||||||||||||||| ||||||||||||| |
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| T |
26285857 |
gatttgaaattatcaccaataacaaaaaaagttaagtt |
26285894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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