View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6647_high_4 (Length: 452)
Name: NF6647_high_4
Description: NF6647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6647_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 167 - 433
Target Start/End: Complemental strand, 4604984 - 4604718
Alignment:
| Q |
167 |
ggcatcaataaggtttgggccggttctcgcttcgctgttcctataaaggccgcggctgtttttagttctaattatgatgacagttctgagctaagccgga |
266 |
Q |
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|||||||||||| |||||||||||||||| | ||||||| ||||||||||| |||||| ||||| | | ||||||||||||||||||||||| |||| |
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| T |
4604984 |
ggcatcaataagtgttgggccggttctcgcctttctgttccaataaaggccgcagctgttattagtacgacatatgatgacagttctgagctaagtcgga |
4604885 |
T |
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| Q |
267 |
gcagttttccggaaggttttgtttttggtactggctcctccaattaccaggtacgttttgtaacattgtgtgtgttgatgtgcatgaggtgtatgttact |
366 |
Q |
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| T |
4604884 |
gcagtttcccggaaggttttgtttttggtactggctcctccaattaccaggtacattttgtaacattgtgtgtgttggtgtgcatgaggtgtatgttact |
4604785 |
T |
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| Q |
367 |
atacatatggatatatgaataatcattgtttcacagttttatatttgattatcctacaggctaagac |
433 |
Q |
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| T |
4604784 |
atacatgtggaaatatgaataatcattgtttcacagttttatatttgattatgctaaaggctaagac |
4604718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 239 - 339
Target Start/End: Complemental strand, 4627389 - 4627289
Alignment:
| Q |
239 |
tatgatgacagttctgagctaagccggagcagttttccggaaggttttgtttttggtactggctcctccaattaccaggtacgttttgtaacattgtgtg |
338 |
Q |
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| T |
4627389 |
tatgctgatagttttgagctaaatcggagcagttttccggaaggttttgtttttggtactggctcctccaattaccaggtacgttttgtaacattgtgtg |
4627290 |
T |
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| Q |
339 |
t |
339 |
Q |
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| T |
4627289 |
t |
4627289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 4605150 - 4605118
Alignment:
| Q |
1 |
agaagtatataaagataaacaaattgacatgcc |
33 |
Q |
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| T |
4605150 |
agaagtatataaagataaaccaattgacatgcc |
4605118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 240 - 306
Target Start/End: Original strand, 18792973 - 18793039
Alignment:
| Q |
240 |
atgatgacagttctgagctaagccggagcagttttccggaaggttttgtttttggtactggctcctc |
306 |
Q |
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|||||||||||||||| ||||| ||||| ||||||||| ||||||| ||||| ||||||| |||||| |
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| T |
18792973 |
atgatgacagttctgatctaagtcggagtagttttccgaaaggtttcgttttcggtactgcctcctc |
18793039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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