View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6647_high_6 (Length: 406)
Name: NF6647_high_6
Description: NF6647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6647_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 191 - 389
Target Start/End: Original strand, 47905506 - 47905704
Alignment:
| Q |
191 |
ggtattacttacaattcgaacaatagcaataactattgttcattagtttcacactttcaccaatattttaataattcatcaaaacgaaacttttttctca |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
47905506 |
ggtattacttacaattcgaacaatagcaataactattgtttattagtttcacactttcaccaatattttaataattcatcaaaatgaaacttttttctca |
47905605 |
T |
|
| Q |
291 |
aggaattcagaaatgaaacttatgtcttcatgatataataactcacataaaagtaaccttaatataataaacatcaatcacagtggcgatttcccaatt |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47905606 |
aggaattcagaaatgaaacttatgtcttcatgatataataactcacataaaagtaaccttaatataataaacatcaatcacagtggcgatttcccaatt |
47905704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 47905314 - 47905438
Alignment:
| Q |
11 |
atcatcatacttttaactctaataacctgttcacctttatcacctccaattatttggtaatcatggataatcgtaattcctttgctggaattcttttcgc |
110 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47905314 |
atcatcatacttttaactctaataacttgttcacctttatcacctccaattatttggtaatcatggataatcgtaattcctttgctggaattcttttcgc |
47905413 |
T |
|
| Q |
111 |
cgtctttaattagcacttcttaccg |
135 |
Q |
| |
|
| ||||||||||||| ||||||||| |
|
|
| T |
47905414 |
catctttaattagcatttcttaccg |
47905438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University