View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6647_low_10 (Length: 379)
Name: NF6647_low_10
Description: NF6647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6647_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 363
Target Start/End: Original strand, 9632300 - 9632647
Alignment:
| Q |
18 |
catacattttagaaagttaagctaagttgaaaatcatatatcgtataaa--taagaaaacatttaaaaaaggttacctgtttgatccctgtacagaggat |
115 |
Q |
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| T |
9632300 |
catacattttagaaagttaagctaagttgaaaatcatatattgtataaaaataagaaaacatttaaaaaaggttacctctttgatccctgtacagaggat |
9632399 |
T |
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| Q |
116 |
ccaagtaacaatgaataccataattgctgcaagtgggtctacatcaatatcaatcccaggaatatgttgataggataaaaatcctggcaagttgtccata |
215 |
Q |
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| T |
9632400 |
ccaagtaacaatgaataccataattgctgcaagtgggtctacatcaatatcaatcccaggtatatgttgatatgataaaaatcctggcaagttgtccata |
9632499 |
T |
|
| Q |
216 |
cctccaataagtgcagcctaatcacaaaaattaaccttttaattatacttagttcagttttaaannnnnnnnataatgtccttaatttaaaaacgctata |
315 |
Q |
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| T |
9632500 |
cctccaataagtgcagcctaatcacaaaaattaaccttttaattatacttagttcatttttaaaaaaaaattataatgtccttaatttaaaaacgctata |
9632599 |
T |
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| Q |
316 |
ccaaattcggggttatgccacgagcaacaacagctccgccaaccacag |
363 |
Q |
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| T |
9632600 |
ccaaatttggggttatgccacgagcaacaacagctccgccaaccacag |
9632647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 81 - 235
Target Start/End: Original strand, 9617615 - 9617769
Alignment:
| Q |
81 |
aaaaaggttacctgtttgatccctgtacagaggatccaagtaacaatgaataccataattgctgcaagtgggtctacatcaatatcaatcccaggaatat |
180 |
Q |
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| T |
9617615 |
aaaaaagttacctctttgatcccggtacataggatccaagtaacaatgaataccacaattgctgcaagtgggtctacaacaatatcaatcccaggaatat |
9617714 |
T |
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| Q |
181 |
gttgataggataaaaatcctggcaagttgtccatacctccaataagtgcagccta |
235 |
Q |
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| T |
9617715 |
gttgatatgataaaaatcctggcaagttgtccatacctccaataagtgcagccta |
9617769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 96 - 239
Target Start/End: Original strand, 9640783 - 9640926
Alignment:
| Q |
96 |
ttgatccctgtacagaggatccaagtaacaatgaataccataattgctgcaagtgggtctacatcaatatcaatcccaggaatatgttgataggataaaa |
195 |
Q |
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||||| || ||||| ||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
9640783 |
ttgatgccagtacacaggatccaagtaacaatcaataccataaatgctgaaagtgggtctacatcaatatcaatcccaggaatacgttgataggataaaa |
9640882 |
T |
|
| Q |
196 |
atcctggcaagttgtccatacctccaataagtgcagcctaatca |
239 |
Q |
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| T |
9640883 |
atcttggcaagttgtccactcctccaataagtgcagcctaatca |
9640926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 88 - 246
Target Start/End: Original strand, 9657522 - 9657680
Alignment:
| Q |
88 |
ttacctgtttgatccctgtacagaggatccaagtaacaatgaataccataattgctgcaagtgggtctacatcaatatcaatcccaggaatatgttgata |
187 |
Q |
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|||||| |||||| || ||||| |||||||| || |||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
9657522 |
ttacctctttgattccagtacacaggatccaggtgacaatgaacaccataattgctgaaagtgggtctacaacaatatcaatcccaggaatatgttgatt |
9657621 |
T |
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| Q |
188 |
ggataaaaatcctggcaagttgtccatacctccaataagtgcagcctaatcacaaaaat |
246 |
Q |
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||||||||||||||||||||| |||| |||||||||||| |||||||||||| |||||| |
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| T |
9657622 |
ggataaaaatcctggcaagttttccacacctccaataagggcagcctaatcagaaaaat |
9657680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 288 - 362
Target Start/End: Original strand, 9617939 - 9618013
Alignment:
| Q |
288 |
ataatgtccttaatttaaaaacgctataccaaattcggggttatgccacgagcaacaacagctccgccaaccaca |
362 |
Q |
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|||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||| |||| |||| |
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| T |
9617939 |
ataatgtccttaatttaaaaacactataccaaattgggggttatgccacgagcaataacagctccaccaatcaca |
9618013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 9617574 - 9617613
Alignment:
| Q |
18 |
catacattttagaaagttaagctaagttgaaaatcatata |
57 |
Q |
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| T |
9617574 |
catacagtttagaaagctaagctaagttgaaaatcatata |
9617613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 314 - 357
Target Start/End: Original strand, 9657836 - 9657879
Alignment:
| Q |
314 |
taccaaattcggggttatgccacgagcaacaacagctccgccaa |
357 |
Q |
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| T |
9657836 |
taccaaattgggggttatgccacgagcaacagcagctccaccaa |
9657879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 33642811 - 33642750
Alignment:
| Q |
120 |
gtaacaatgaataccataattgctgcaagtgggtctacatcaatatcaatcccaggaatatg |
181 |
Q |
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||||||| ||||||| |||||||||| |||||| || |||||||||||||||||||||| |
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| T |
33642811 |
gtaacaagtaataccaaaattgctgcacatgggtccacgacaatatcaatcccaggaatatg |
33642750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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