View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6647_low_12 (Length: 357)

Name: NF6647_low_12
Description: NF6647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6647_low_12
NF6647_low_12
[»] chr7 (5 HSPs)
chr7 (1-200)||(47118313-47118512)
chr7 (68-147)||(29366607-29366686)
chr7 (53-147)||(36742208-36742302)
chr7 (68-145)||(37327293-37327370)
chr7 (216-245)||(47118268-47118297)
[»] chr1 (4 HSPs)
chr1 (55-142)||(15061449-15061536)
chr1 (63-145)||(42508251-42508333)
chr1 (55-147)||(43344793-43344885)
chr1 (78-142)||(43670696-43670760)
[»] chr3 (7 HSPs)
chr3 (68-146)||(38216338-38216416)
chr3 (68-147)||(39450614-39450693)
chr3 (78-142)||(14741939-14742003)
chr3 (63-142)||(25189648-25189727)
chr3 (63-142)||(38018458-38018537)
chr3 (55-95)||(864372-864412)
chr3 (63-143)||(49726401-49726481)
[»] chr4 (4 HSPs)
chr4 (63-147)||(18879339-18879423)
chr4 (63-138)||(12499018-12499093)
chr4 (110-147)||(44362906-44362943)
chr4 (63-147)||(44363374-44363458)
[»] chr5 (1 HSPs)
chr5 (68-146)||(14626197-14626275)
[»] chr8 (4 HSPs)
chr8 (68-147)||(36632890-36632968)
chr8 (63-142)||(3207618-3207697)
chr8 (68-147)||(20771681-20771760)
chr8 (68-147)||(20781475-20781554)
[»] chr2 (3 HSPs)
chr2 (68-142)||(35020972-35021046)
chr2 (68-142)||(40609913-40609987)
chr2 (54-145)||(1602637-1602727)
[»] scaffold0157 (1 HSPs)
scaffold0157 (63-138)||(21384-21459)
[»] chr6 (1 HSPs)
chr6 (63-142)||(28587615-28587694)


Alignment Details
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 47118512 - 47118313
Alignment:
Q  1 cattaaaatcagcatttaaaacacgtcatttcaccatattttttatcaacttgttgatgaatggacaaaaactgtcaaattttaaaatagaaggatcaat 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||    
T  47118512 cattaaaagcagcatttaaaacacgtcatttcaccatattttttatcaactagttgatgaatggacaaaaaccgtcaatttttaaaatagaaggatcaat 47118413  T
Q  101 tatgtagattggtgaaaatatggggaccaaaactgcaattaaacctagtttatatgatatgtactatattattgtagttattgaaaaaatatagttatga 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||  ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  47118412 tatgtagattggtgaaaatatggggactaaaactgcaattaagtctaatttatatgatatgtactatattattgttgttattgaaaaaatatagttatga 47118313  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 147
Target Start/End: Original strand, 29366607 - 29366686
Alignment:
Q  68 aaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaaaccta 147  Q
    |||| |||||||| |||||||||| | ||||||| || | |||| ||||||||  |||||||||||||||||||| ||||    
T  29366607 aaaattgtcaaatattaaaatagaggaatcaattttgcaaattgatgaaaatagagggaccaaaactgcaattaagccta 29366686  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 147
Target Start/End: Original strand, 36742208 - 36742302
Alignment:
Q  53 gttgatgaatggacaaaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaaaccta 147  Q
    ||||||||| |||| |||||||| ||||||||||||| | ||| ||||| || | |||| |||||||| |||||  |||| | ||||||| ||||    
T  36742208 gttgatgaaaggaccaaaactgttaaattttaaaatatagggaccaattttgcaaattgatgaaaatagggggattaaaattacaattaagccta 36742302  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 145
Target Start/End: Complemental strand, 37327370 - 37327293
Alignment:
Q  68 aaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaaacc 145  Q
    |||| |||| |||||||||||||  ||| || || || | | ||||||||||| ||||| ||||||||||||||||||    
T  37327370 aaaattgtcgaattttaaaatagggggaccatttctgcaaaatggtgaaaatagggggatcaaaactgcaattaaacc 37327293  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 245
Target Start/End: Complemental strand, 47118297 - 47118268
Alignment:
Q  216 ataatttgaaagtcacaattatctatactt 245  Q
    ||||||||||||||||||||||||||||||    
T  47118297 ataatttgaaagtcacaattatctatactt 47118268  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 55 - 142
Target Start/End: Complemental strand, 15061536 - 15061449
Alignment:
Q  55 tgatgaatggacaaaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaa 142  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||| |  | | || ||||||||||| || |||||||||||||||    
T  15061536 tgatgaatggaccaaaactgtcaaattttaaaataggaggatcaattctacaaaatgatgaaaatatggagatcaaaactgcaattaa 15061449  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 63 - 145
Target Start/End: Complemental strand, 42508333 - 42508251
Alignment:
Q  63 ggacaaaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaaacc 145  Q
    |||| ||||||||| |||||||||||||  ||| || || |||| | ||||||||||| | ||||||||||||||||||||||    
T  42508333 ggaccaaaactgtcgaattttaaaatagggggaccatttctgtaaaatggtgaaaataggaggaccaaaactgcaattaaacc 42508251  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 147
Target Start/End: Complemental strand, 43344885 - 43344793
Alignment:
Q  55 tgatgaatggacaaaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaaaccta 147  Q
    ||||||| |||| ||| ||||| |||||||||||||  ||| ||||| || | | |  ||||||||||| |||||||| ||||||||| ||||    
T  43344885 tgatgaagggaccaaacctgtcgaattttaaaatagggggaccaattctgcaaaataatgaaaatatggagaccaaaattgcaattaagccta 43344793  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 43670760 - 43670696
Alignment:
Q  78 aattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaa 142  Q
    ||||||||||||| |||| ||||| || | |   ||||||||| |||||||||||||||||||||    
T  43670760 aattttaaaataggaggaccaattttgcaaaagagtgaaaatagggggaccaaaactgcaattaa 43670696  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 38216338 - 38216416
Alignment:
Q  68 aaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaaacct 146  Q
    |||| |||| |||||||||||||  ||| |||||||| | | ||||||||||| |||||||||||||||||||||||||    
T  38216338 aaaagtgtcgaattttaaaatagggggaccaattatgcaaaatggtgaaaatagggggaccaaaactgcaattaaacct 38216416  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 39450693 - 39450614
Alignment:
Q  68 aaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaaaccta 147  Q
    |||||||||||||||||||||||  ||| ||||| || | | ||||||||||| |||||| |||||||||||||| ||||    
T  39450693 aaaactgtcaaattttaaaatagggggaccaattctgcaaaatggtgaaaatagggggacaaaaactgcaattaagccta 39450614  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 14742003 - 14741939
Alignment:
Q  78 aattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaa 142  Q
    ||||||||| |||| ||| ||||| || | | ||||||||||| |||||||||||||||||||||    
T  14742003 aattttaaattagagggaccaattttgcaaagtggtgaaaatagggggaccaaaactgcaattaa 14741939  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 63 - 142
Target Start/End: Original strand, 25189648 - 25189727
Alignment:
Q  63 ggacaaaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaa 142  Q
    |||| ||||||||  |||||||||||||  ||| ||||| || | | |||| |||||| |||||||||||||||||||||    
T  25189648 ggaccaaaactgttgaattttaaaatagggggaccaattctgcaaaatggtaaaaatagggggaccaaaactgcaattaa 25189727  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 63 - 142
Target Start/End: Original strand, 38018458 - 38018537
Alignment:
Q  63 ggacaaaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaa 142  Q
    |||| |||| |||||||||||||||||||  || ||||| | || | ||  ||||||| |||||||||||||||||||||    
T  38018458 ggaccaaaattgtcaaattttaaaatagagagaccaattctataaaatgaagaaaatagggggaccaaaactgcaattaa 38018537  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 864412 - 864372
Alignment:
Q  55 tgatgaatggacaaaaactgtcaaattttaaaatagaagga 95  Q
    ||||||| |||  ||||||||||||||||||||||||||||    
T  864412 tgatgaaaggatgaaaactgtcaaattttaaaatagaagga 864372  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 143
Target Start/End: Complemental strand, 49726481 - 49726401
Alignment:
Q  63 ggacaaaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaaa 143  Q
    |||| ||||||||||||||||||||||| |  ||||||| | || | || ||||||||  |||| |||||||| |||||||    
T  49726481 ggaccaaaactgtcaaattttaaaataggaaaatcaattctataaaatgatgaaaataaagggatcaaaactgtaattaaa 49726401  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 147
Target Start/End: Original strand, 18879339 - 18879423
Alignment:
Q  63 ggacaaaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaaaccta 147  Q
    |||| |||| |||||||||||||| |||  |||||||||||| | | ||||||||||| ||||||||||| ||||||||| ||||    
T  18879339 ggaccaaaattgtcaaattttaaattagggggatcaattatgcaaaatggtgaaaatagggggaccaaaattgcaattaagccta 18879423  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 12499093 - 12499018
Alignment:
Q  63 ggacaaaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaa 138  Q
    |||| ||||||||| |||||||||||||  ||| ||||| || | | ||||||||||| ||||| |||||||||||    
T  12499093 ggaccaaaactgtcgaattttaaaatagggggaccaattctgcaaaatggtgaaaatagggggatcaaaactgcaa 12499018  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 44362943 - 44362906
Alignment:
Q  110 tggtgaaaatatggggaccaaaactgcaattaaaccta 147  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  44362943 tggtgaaaatagggggaccaaaactgcaattaagccta 44362906  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 147
Target Start/End: Original strand, 44363374 - 44363458
Alignment:
Q  63 ggacaaaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaaaccta 147  Q
    |||| |||| |||| |||||||||||||  ||| |||||  | | | || |||||||| ||||||||||||||||||||| ||||    
T  44363374 ggaccaaaattgtcgaattttaaaatagggggaccaatttcgcaaaatgatgaaaataaggggaccaaaactgcaattaagccta 44363458  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 14626275 - 14626197
Alignment:
Q  68 aaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaaacct 146  Q
    ||||||||||||||||||||||| |||| ||||| |||| |   |||||||||  ||||||||||||| ||||||||||    
T  14626275 aaaactgtcaaattttaaaataggaggaccaattctgtaaaaaagtgaaaataaagggaccaaaactgtaattaaacct 14626197  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 147
Target Start/End: Original strand, 36632890 - 36632968
Alignment:
Q  68 aaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaaaccta 147  Q
    ||||||||| || ||||||||| | ||||||||| || ||| |||| |||||| |||||| |||||||||||||||||||    
T  36632890 aaaactgtcgaactttaaaatatagggatcaattctgcagaatggtaaaaata-ggggactaaaactgcaattaaaccta 36632968  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 63 - 142
Target Start/End: Complemental strand, 3207697 - 3207618
Alignment:
Q  63 ggacaaaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaa 142  Q
    |||| |||| |||| ||||||||||||||  || ||||| |||| | || |||||||||| ||||||||||| |||||||    
T  3207697 ggactaaaattgtcgaattttaaaatagagagaccaattttgtaaaatgatgaaaatatgaggaccaaaactacaattaa 3207618  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 147
Target Start/End: Original strand, 20771681 - 20771760
Alignment:
Q  68 aaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaaaccta 147  Q
    |||| ||| ||||||||||||||| ||| ||||| || | | || |||||||| ||||||||||||| ||||||| ||||    
T  20771681 aaaaatgttaaattttaaaatagagggaccaattttgcaaaatgatgaaaatagggggaccaaaactacaattaagccta 20771760  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 147
Target Start/End: Original strand, 20781475 - 20781554
Alignment:
Q  68 aaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaaaccta 147  Q
    |||| ||| ||||||||||||||| ||| ||||| || | | || |||||||| ||||||||||||| ||||||| ||||    
T  20781475 aaaaatgttaaattttaaaatagagggaccaattttgcaaaatgatgaaaatagggggaccaaaactacaattaagccta 20781554  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 142
Target Start/End: Complemental strand, 35021046 - 35020972
Alignment:
Q  68 aaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaa 142  Q
    ||||||||| |||||||||||||| ||| || ||||||| | ||||||||||| | |||| |||||| |||||||    
T  35021046 aaaactgtcgaattttaaaatagagggaccatttatgtaaaatggtgaaaataagaggactaaaactacaattaa 35020972  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 142
Target Start/End: Original strand, 40609913 - 40609987
Alignment:
Q  68 aaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaa 142  Q
    |||||| ||||||||||||||||  ||| ||||| |||| | | ||||||||| | |||||||||||||||||||    
T  40609913 aaaactctcaaattttaaaatagggggaccaattctgtaaaattgtgaaaataggaggaccaaaactgcaattaa 40609987  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 145
Target Start/End: Complemental strand, 1602727 - 1602637
Alignment:
Q  54 ttgatgaatggacaaaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaaacc 145  Q
    |||||| | |||| |||||||||||||||||||| | | |||||||||  | | | ||||||||||| || ||| |||||||||||||||||    
T  1602727 ttgatggagggaccaaaactgtcaaattttaaaaca-agggatcaattccgcaaaatggtgaaaatagggagactaaaactgcaattaaacc 1602637  T

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Target: scaffold0157 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 21384 - 21459
Alignment:
Q  63 ggacaaaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaa 138  Q
    |||| ||||||||| |||||||||||||  ||| ||||| || | | ||||||||||| ||||| |||||||||||    
T  21384 ggaccaaaactgtcgaattttaaaatagggggaccaattctgcaaaatggtgaaaatagggggatcaaaactgcaa 21459  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 63 - 142
Target Start/End: Complemental strand, 28587694 - 28587615
Alignment:
Q  63 ggacaaaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaa 142  Q
    |||| ||||||||| |||||||||||||  ||| ||| | || | | ||||||||| | |||||||||||||||||||||    
T  28587694 ggacgaaaactgtcgaattttaaaatagggggaccaaatttgcaaaatggtgaaaacagggggaccaaaactgcaattaa 28587615  T

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