View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6647_low_16 (Length: 256)
Name: NF6647_low_16
Description: NF6647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6647_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 15073419 - 15073659
Alignment:
| Q |
1 |
ttgtgatgtggaattggaatgttgaatggcagcgattgctgggaagtcaatgatgaagtttgagagtggatacaatgtggaaactgtgtttgatggaagc |
100 |
Q |
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| T |
15073419 |
ttgtgatgtggaattggaatgttgaatggcagcgattgctgggaagtcaatgatgaagtttgagagtggatacaatgtggaaactgtgtttgatggaagc |
15073518 |
T |
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| Q |
101 |
aagcttggaattgagccttatgcagttgaggtgttgtctaatggggagcttctgattctagattcggagaatagtaacatttataagatttcgtcttcac |
200 |
Q |
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| T |
15073519 |
aagcttggaattgagccttatgcagttgaggtgttgtctaatggggagcttctgattctagattcggagaatagtaacatttataagatttcgtcttcac |
15073618 |
T |
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| Q |
201 |
tttctttgtgtaagtgtgccaatgtgataacttcacctatg |
241 |
Q |
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| T |
15073619 |
tttctttgtgtaagtgtgccaatgtgataacttcacctatg |
15073659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 50 - 215
Target Start/End: Complemental strand, 26717831 - 26717666
Alignment:
| Q |
50 |
atgatgaagtttgagagtggatacaatgtggaaactgtgtttgatggaagcaagcttggaattgagccttatgcagttgaggtgttgtctaatggggagc |
149 |
Q |
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| T |
26717831 |
atgatgaaatttgagagtggttacaatgtggaaactgtgtttgatggaagtaagcttggaattgagccttatgctgttgaggttttgcataatggggagc |
26717732 |
T |
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| Q |
150 |
ttctgattctagattcggagaatagtaacatttataagatttcgtcttcactttctttgtgtaagt |
215 |
Q |
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| T |
26717731 |
ttcttattcttgattctgctaatagtaacctttacagaatctcttcatcactctctttgtgtaagt |
26717666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 1850989 - 1851052
Alignment:
| Q |
54 |
tgaagtttgagagtggatacaatgtggaaactgtgtttgatggaagcaagcttggaattgagcc |
117 |
Q |
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| T |
1850989 |
tgaaatttgagagtggttacaatgtggaaacaatatttgatggaagtaagcttggaattgagcc |
1851052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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