View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6647_low_2 (Length: 596)
Name: NF6647_low_2
Description: NF6647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6647_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 551; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 1 - 592
Target Start/End: Complemental strand, 38567483 - 38566892
Alignment:
| Q |
1 |
tggaggcacagtgattaatgtgattatggtcgtgttaactgcttccatgtaagtggtaccttcatttttatgcacccccatgctaagtcaatttgaaagt |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38567483 |
tggaggcacggtgattaatgtgattatggtcgtgttaactgcttccatgtaagtggtaccttcatttttatgcacctccatgctaagtcaatttgaaagt |
38567384 |
T |
|
| Q |
101 |
tccttaattacattaattcttgtttcttcatatggatatgtannnnnnnaggtctcttggccaggcatcatctggtttgagtgcttttgcggcaggtcag |
200 |
Q |
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| T |
38567383 |
tccttaattacattaattctcgtttcttcatatggatatgtatttttttaggtctcttggccaggcatcatctggtttgagtgcttttgcggcaggtcgg |
38567284 |
T |
|
| Q |
201 |
gcggcggcttacaaaatgtttgagacaattaaaaggaggccagagatagatgcttatgatccaaatggaaaaatattagaggatattcaaggtgaaatag |
300 |
Q |
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| T |
38567283 |
gcggcggcttacaaaatgtttgagacaattaaaaggaggccagagatagatgcttatgatccaaatggaaaaatattagaggatattcaaggtgaaatag |
38567184 |
T |
|
| Q |
301 |
agttgaaagaagtttatttcagttatccggcaagacctgaggagctgatatttaatggattctctcttcatataccgagcggaacaaccacagcattggt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38567183 |
agttgaaagaagtttatttcagttatccggcaagacctgaggagctgatatttaatggattctctcttcatataccgagcggaacaaccacagcattggt |
38567084 |
T |
|
| Q |
401 |
tggacaaagtggaagtggaaagtcgacaattatcaatttggtagagagattctatgatccacaggcaggtgaagttcttatcgatggaattaacatgaaa |
500 |
Q |
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| T |
38567083 |
tggacaaagtggaagtggaaagtcgacaattatcagtttggtagagagattctatgatccacaggcaggtgaagttcttatcgatggaattaacatgaaa |
38566984 |
T |
|
| Q |
501 |
gaatttcaggtcaggtggatcagagggaaaattggtcttgttagccaggagccagtgttgtttgcatccagcattaaggataacatttcata |
592 |
Q |
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| T |
38566983 |
gaatttcaggtcaggtggatcagagggaaaattggtcttgttagccaggagccagtgttgtttgcatccagcattaaggataacatttcata |
38566892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 150 - 592
Target Start/End: Complemental strand, 38526209 - 38525767
Alignment:
| Q |
150 |
aggtctcttggccaggcatcatctggtttgagtgcttttgcggcaggtcaggcggcggcttacaaaatgtttgagacaattaaaaggaggccagagatag |
249 |
Q |
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||||||||||||||||||||| | || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38526209 |
aggtctcttggccaggcatcaccaagtatgagtgcttttgcggcgggtcaggcggcggcttacaaaatgtttgagacaattaaaaggaggccagagatag |
38526110 |
T |
|
| Q |
250 |
atgcttatgatccaaatggaaaaatattagaggatattcaaggtgaaatagagttgaaagaagtttatttcagttatccggcaagacctgaggagctgat |
349 |
Q |
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| T |
38526109 |
atgcttatgatccaaatggaaaaatattagaggatattcaaggtgagatagagttgaaagaagtttatttcagttatccggcaagacctgaggagctgat |
38526010 |
T |
|
| Q |
350 |
atttaatggattctctcttcatataccgagcggaacaaccacagcattggttggacaaagtggaagtggaaagtcgacaattatcaatttggtagagaga |
449 |
Q |
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||| ||||||||||||||||||||| | |||||||||||| | |||||||||||||||||||||||||||||||| ||| |||| | ||||||||| ||| |
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| T |
38526009 |
attcaatggattctctcttcatatatcaagcggaacaaccgcggcattggttggacaaagtggaagtggaaagtccacagttattagtttggtagaaaga |
38525910 |
T |
|
| Q |
450 |
ttctatgatccacaggcaggtgaagttcttatcgatggaattaacatgaaagaatttcaggtcaggtggatcagagggaaaattggtcttgttagccagg |
549 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||| ||||||| |
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| T |
38525909 |
ttctatgatccacaggccggtgaagtacttatcgatggaattaacatgaaagaacttcagcttaggtggatcagagggaaaattggtcttgtcagccagg |
38525810 |
T |
|
| Q |
550 |
agccagtgttgtttgcatccagcattaaggataacatttcata |
592 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
38525809 |
agccagtgttatttgcatccagcattaaggataacattgcata |
38525767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 38526351 - 38526302
Alignment:
| Q |
5 |
ggcacagtgattaatgtgattatggtcgtgttaactgcttccatgtaagt |
54 |
Q |
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| T |
38526351 |
ggcaccgtgattaatgtgattatcgccgtgttaacagcttccatgtaagt |
38526302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 396 - 478
Target Start/End: Original strand, 51199472 - 51199554
Alignment:
| Q |
396 |
ttggttggacaaagtggaagtggaaagtcgacaattatcaatttggtagagagattctatgatccacaggcaggtgaagttct |
478 |
Q |
| |
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||||| || |||||||| |||||||| || ||| || ||| |||| |||||||||| |||||||||||||| ||||||||||| |
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| T |
51199472 |
ttggtagggcaaagtgggagtggaaaatccacagttgtcagtttgatagagagattttatgatccacaggctggtgaagttct |
51199554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 321 - 461
Target Start/End: Original strand, 51145408 - 51145548
Alignment:
| Q |
321 |
agttatccggcaagacctgaggagctgatatttaatggattctctctt-catataccgagcggaacaaccacagcattggttggacaaagtggaagtgga |
419 |
Q |
| |
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| T |
51145408 |
agttatcctacaagaccagatgaactgatattcaatggattttctctttcat-taccaagcggcactactgcagctttggtagggcaaagtggaagtggg |
51145506 |
T |
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| Q |
420 |
aagtcgacaattatcaatttggtagagagattctatgatcca |
461 |
Q |
| |
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|| || ||| || | | |||| |||||||||||||||||||| |
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| T |
51145507 |
aaatccacagttgttagtttgatagagagattctatgatcca |
51145548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 321 - 461
Target Start/End: Original strand, 51156549 - 51156689
Alignment:
| Q |
321 |
agttatccggcaagacctgaggagctgatatttaatggattctctctt-catataccgagcggaacaaccacagcattggttggacaaagtggaagtgga |
419 |
Q |
| |
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|||||||| ||||||| || || |||||||| |||||||| |||||| ||| |||| ||||| || || |||| ||||| || |||||||||||||| |
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| T |
51156549 |
agttatcctacaagaccagatgaactgatattcaatggattttctctttcat-taccaagcggcactactgcagctttggtagggcaaagtggaagtggg |
51156647 |
T |
|
| Q |
420 |
aagtcgacaattatcaatttggtagagagattctatgatcca |
461 |
Q |
| |
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|| || ||| || | | |||| |||||||||||||||||||| |
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| T |
51156648 |
aaatccacagttgttagtttgatagagagattctatgatcca |
51156689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 405 - 465
Target Start/End: Original strand, 51212627 - 51212687
Alignment:
| Q |
405 |
caaagtggaagtggaaagtcgacaattatcaatttggtagagagattctatgatccacagg |
465 |
Q |
| |
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|||||||| |||||||| || ||| | || |||||| |||||||||| ||||||||||||| |
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| T |
51212627 |
caaagtgggagtggaaaatcaacagtgataaatttgatagagagattttatgatccacagg |
51212687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 478
Target Start/End: Complemental strand, 49737396 - 49737314
Alignment:
| Q |
396 |
ttggttggacaaagtggaagtggaaagtcgacaattatcaatttggtagagagattctatgatccacaggcaggtgaagttct |
478 |
Q |
| |
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||||| ||||||||||| ||||| || ||||| |||| | |||| |||||||||| ||||||||||||| |||||| |||| |
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| T |
49737396 |
ttggtaggacaaagtgggagtgggaaatcgacggttattagtttgatagagagattttatgatccacagggtggtgaaattct |
49737314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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