View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6647_low_3 (Length: 548)
Name: NF6647_low_3
Description: NF6647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6647_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 16 - 487
Target Start/End: Original strand, 36465036 - 36465507
Alignment:
| Q |
16 |
acctgtgaaaaatattagtatcaaagatgttatcatccagtcaggaaaaatgacattaaaagcaacaccaagactgattccaagcattaacattggttga |
115 |
Q |
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| T |
36465036 |
acctgtgaaaaatattagtatcaaagatgttatcatccagtcaggaaaaatgacattaaaagcaacaccaagactgattccaagcattaacattggttga |
36465135 |
T |
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| Q |
116 |
aaaagaagtgctaaatcatagtcaatcacaggcaggtcaagtgttggatgtctttgcctcaagttgtataaaacagttgctcctgctccacctgtaatca |
215 |
Q |
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| T |
36465136 |
aaaagaagtgctaaatcatagtcaatcacaggcaggtcaagtgttgggtgtctttgcctcaagttgtataaaacagttgctcctgctccacctgtaatca |
36465235 |
T |
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| Q |
216 |
tgccttcaccaaacaaacaaaaatccatgttatctattttaatagtgaaatgatactttaaaaataggacacacactaagacaacatgtagcacgtgtta |
315 |
Q |
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| T |
36465236 |
tgccttcaccaaacaaacaaaaatccatgttatctattttaatagagaaatgatactttaaaaataggacacacactaagacaacatgtagcacgtgtta |
36465335 |
T |
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| Q |
316 |
tattggttagaaagttgaggtttgatattcagcatatacaatgaggtgacaagtataaaagtccttgataatgatctttaaagaattttccgacaacaga |
415 |
Q |
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| T |
36465336 |
tattggttagaaagttgaggtttgatattcagcatatacaatgaggtgagaagtataaaagtccttgataatgatctttaaagaattttccgacaacaga |
36465435 |
T |
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| Q |
416 |
gggagattggaaaacactttggaaatggcatgaaccatatcacattcaaacttttatttattgctagcacat |
487 |
Q |
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| T |
36465436 |
gggagattggaaaacactttggaaatggcatgaaccatatcacattcaaacttttatttattgccagcacat |
36465507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 20 - 329
Target Start/End: Original strand, 36474218 - 36474548
Alignment:
| Q |
20 |
gtgaaaaatattagtatcaaagatgttatcatccagtcaggaaaaatgacattaaaagcaacaccaagactgattccaagcattaacattggttgaaaaa |
119 |
Q |
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||||||||||| | || ||||| ||||| |||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36474218 |
gtgaaaaatatgattagcaaagttgttaacatccagtcagggaaaatgagattgaaagcaacaccaagactgattccaagcattaacattggttggaaaa |
36474317 |
T |
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| Q |
120 |
gaagtgctaaatcatagtcaatcacaggcaggtcaagtgttggatgtctttgcctcaagttgtataaaacagttgctcctgctccacctgtaatcatgcc |
219 |
Q |
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| T |
36474318 |
gaagtgctaaatcatagtcaatcacaggcaggtcaagtgttgggtgtcttttcttcaagttgtataaaacagttgctcctgctccaccagtaatcatgac |
36474417 |
T |
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| Q |
220 |
ttcac--caaacaaacaaa-------------aatccatgttatctattttaatagtgaaatgatacttt---aaaaataggacac---acactaagaca |
298 |
Q |
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| T |
36474418 |
ttcacaccaaacaaacaaacacatatgcattcaatccatattacgtattttaatagagaaatgatactttgacaaaaatattataagaaacactaagaca |
36474517 |
T |
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| Q |
299 |
acatgtagcacgtgttatattggttagaaag |
329 |
Q |
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| T |
36474518 |
acatatagcacatgttatattggttagaaag |
36474548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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