View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6647_low_4 (Length: 511)
Name: NF6647_low_4
Description: NF6647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6647_low_4 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 16 - 511
Target Start/End: Complemental strand, 31037594 - 31037087
Alignment:
| Q |
16 |
gttttgtccatgtccaccaatcacttatttatttatttattttgaagatttaaacaaagacagcaataccttgccatccaacgacgaagaatgcaaccac |
115 |
Q |
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| T |
31037594 |
gttttgtccatgtccaccaatcatttatttatttatttattttgaagatttaaacagagacagcaataccttgccatccaacgacgaagaacacaaccgc |
31037495 |
T |
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| Q |
116 |
aaacttctcaaaaat------gataggtaaagacgtaacaactacttcattgagcagggggcggaagggtcggcttgtcccggtacagagtggcaaagcc |
209 |
Q |
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| T |
31037494 |
aaacttctcaaaaatcaacatgataggtaaagacttaacaactacttcattgagcagggggcggaagggtcggcttgtcccggtacagggtggcaaagcc |
31037395 |
T |
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| Q |
210 |
attttgcagatagaacttgatggaaagagaattttcaaatccctggagaattgctgggatacaaagtagttgaccttgtttccatgtgaatgattgtggt |
309 |
Q |
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| T |
31037394 |
attttccaaatagaacttgatggaaagggaattttcaaatccctggagaattgctgggatacaaagtagttgaccttgtttccatgtgaatgattgtggt |
31037295 |
T |
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| Q |
310 |
gaagaaataatgcctttctgtgaacattgaacaaagtgttgatgttgaagggttccatgatgaagacaaaacaacacatgatgtttaggtttcacacaaa |
409 |
Q |
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| T |
31037294 |
gaagaaataatgcctttctgtgaacattgaacaaagtgttgatgttgaagggttccatgatgaagacagaacaacacatgatgcttaggtttcacacaaa |
31037195 |
T |
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| Q |
410 |
tgttttcgacactagaatgtgacatgaaagga------gtcaagtattgttatctttaagaaggaagaaaatagagctgagagagaatgttcaaaaagga |
503 |
Q |
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| T |
31037194 |
tgttttcgacactagaatgtgacatgaaaggagatattgtcaagtattgttatctttaagaaggaagaaaatagagctgagagagaatgttcaaaaagga |
31037095 |
T |
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| Q |
504 |
atagtacc |
511 |
Q |
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| T |
31037094 |
atagtacc |
31037087 |
T |
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Target: chr8 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 203 - 286
Target Start/End: Complemental strand, 33536538 - 33536455
Alignment:
| Q |
203 |
caaagccattttgcagatagaacttgatggaaagagaattttcaaatccctggagaattgctgggatacaaagtagttgacctt |
286 |
Q |
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| T |
33536538 |
caaagccattgtccagatataacttgatcgaaagggaattttcaaatccctagtgaattgctgggatacaaagtagttgacctt |
33536455 |
T |
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