View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6647_low_8 (Length: 385)

Name: NF6647_low_8
Description: NF6647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6647_low_8
NF6647_low_8
[»] chr7 (12 HSPs)
chr7 (29-368)||(2693398-2693738)
chr7 (101-365)||(2103326-2103587)
chr7 (212-365)||(2055035-2055188)
chr7 (101-346)||(2247236-2247479)
chr7 (214-365)||(2071435-2071586)
chr7 (212-365)||(2097137-2097290)
chr7 (212-365)||(2124510-2124663)
chr7 (110-368)||(2136929-2137183)
chr7 (291-365)||(2121227-2121301)
chr7 (234-298)||(2120527-2120591)
chr7 (108-167)||(2054199-2054259)
chr7 (101-168)||(2054967-2055035)
[»] chr8 (2 HSPs)
chr8 (29-98)||(28471120-28471189)
chr8 (65-98)||(28462073-28462106)
[»] chr3 (2 HSPs)
chr3 (35-98)||(54744147-54744210)
chr3 (33-95)||(31005357-31005419)


Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 29 - 368
Target Start/End: Complemental strand, 2693738 - 2693398
Alignment:
Q  29 tcacaccaataaacattgatgtgtgtagaacgggtcagtgacaaccaataaccaaaacaattgcaagcaaaatcttaccagatgcaattacaacaacaaa 128  Q
    ||||||||||||||||||||||| | |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2693738 tcacaccaataaacattgatgtgcggagaacgggtcagcggcaaccaataaccaaaacaattgcaagcaaaatcttaccagatgcaattacaacaacaaa 2693639  T
Q  129 agaaa-ctaaagcaaatgagaaccataaatacagaggactaacacatttattgctttcaactaacaagacccttttgagccatcataacataaaaacaat 227  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2693638 agaaaactaaagcaaatgagaaccataaatacagaggactaacaaatttattgctttcaactaacaagacccttttgagccatcataacataaaaacaat 2693539  T
Q  228 tcattaatgtctcttaaaaatcttattaagaaatatcataactgaaacgctaaggcaatctctacaccatgcaaatacatgtggaaagtaagtgtttccc 327  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2693538 tcattaatgtctcttaaaaatcttattaagaaatatcataactgaaacgctaaggcaatctctacaccatgcaaatacctgtggaaagtaagtgtttccc 2693439  T
Q  328 aatgcaacaccagcaacaactccacctccatacccaataag 368  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  2693438 aatgcaacaccagcaacaaatccacctccatacccaataag 2693398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 101 - 365
Target Start/End: Original strand, 2103326 - 2103587
Alignment:
Q  101 tcttaccagatgcaattacaacaacaaaag-aaactaaagcaaatgagaaccataaatacagaggactaacacatttattgctttcaactaacaagaccc 199  Q
    |||||| | |||||||||||| |||| ||| |||||||| ||||| ||||| ||||||| |||||||||| |  |||||||| ||| ||| |||||||||    
T  2103326 tcttacaatatgcaattacaagaacagaaggaaactaaaacaaataagaac-ataaatagagaggactaatatctttattgcattcgactcacaagaccc 2103424  T
Q  200 ttttgagccatcataacataaaaacaattcattaatgtctcttaaaaatcttattaagaaatatcataactgaaacgctaaggcaatctctacaccatgc 299  Q
    |||| | ||||   ||||||||||||| |||||||||||||||||||||||||||||  || || ||||||||||||||||||||||||||| |||||||    
T  2103425 ttttaaaccat---aacataaaaacaactcattaatgtctcttaaaaatcttattaaccaaaattataactgaaacgctaaggcaatctctataccatgc 2103521  T
Q  300 aaatacatgtggaaagtaagtgtttcccaatgcaacaccagcaacaactccacctccatacccaat 365  Q
    |||||| ||  |||||||||||||||||||||| || |||||||||| |||||| ||||| |||||    
T  2103522 aaatacctgcagaaagtaagtgtttcccaatgccactccagcaacaagtccaccgccatatccaat 2103587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 212 - 365
Target Start/End: Original strand, 2055035 - 2055188
Alignment:
Q  212 ataacataaaaacaattcattaatgtctcttaaaaatcttattaagaaatatcataactgaaacgctaaggcaatctctacaccatgcaaatacatgtgg 311  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| ||  |    
T  2055035 ataacataaaaacaactcattaatgtctcttaaaaatcttattaagcaaaattataactgaaacgctaaggcaatctctacaccatgcaaatacctggag 2055134  T
Q  312 aaagtaagtgtttcccaatgcaacaccagcaacaactccacctccatacccaat 365  Q
    ||||||||||||||||||||| || |||||| ||| |||||| ||||| |||||    
T  2055135 aaagtaagtgtttcccaatgccactccagcatcaagtccaccgccatatccaat 2055188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 101 - 346
Target Start/End: Complemental strand, 2247479 - 2247236
Alignment:
Q  101 tcttaccagatgcaattacaacaacaaaag-aaactaaagcaaatgagaaccataaatacagaggactaacacatttattgctttcaactaacaagaccc 199  Q
    |||||| | ||| |||||||| |||| ||| |||||||| ||||| |||||||||||||  ||| ||||| |  ||||||||| |  ||| |||| ||      
T  2247479 tcttacaaaatgaaattacaagaacagaaggaaactaaaacaaataagaaccataaatagggagaactaatatgtttattgctatggactcacaatacta 2247380  T
Q  200 ttttgagccatcataacataaaaacaattcattaatgtctcttaaaaatcttattaagaaatatcataactgaaacgctaaggcaatctctacaccatgc 299  Q
    |||| |||   |||||||||||| ||| || |||||| |||| ||||||||||||||| || || |||||||||||||||||||||||||||||||||||    
T  2247379 ttttaagc---cataacataaaagcaactcgttaatgcctctcaaaaatcttattaagcaaaattataactgaaacgctaaggcaatctctacaccatgc 2247283  T
Q  300 aaatacatgtggaaagtaagtgtttcccaatgcaacaccagcaacaa 346  Q
    |||||| ||||||||||||||| ||||||||||||| ||||||||||    
T  2247282 aaatacctgtggaaagtaagtgcttcccaatgcaactccagcaacaa 2247236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 214 - 365
Target Start/End: Original strand, 2071435 - 2071586
Alignment:
Q  214 aacataaaaacaattcattaatgtctcttaaaaatcttattaagaaatatcataactgaaacgctaaggcaatctctacaccatgcaaatacatgtggaa 313  Q
    ||||||||||||| ||| |||||||||||||||||||||||||| || || ||||||||||||||||||||||||||| ||||||||||||| ||  |||    
T  2071435 aacataaaaacaactcactaatgtctcttaaaaatcttattaagcaaaattataactgaaacgctaaggcaatctctataccatgcaaatacctgcagaa 2071534  T
Q  314 agtaagtgtttcccaatgcaacaccagcaacaactccacctccatacccaat 365  Q
    ||||| |||||||||||||||| |||||||||| |||||| ||||| |||||    
T  2071535 agtaactgtttcccaatgcaactccagcaacaagtccaccaccatatccaat 2071586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 212 - 365
Target Start/End: Original strand, 2097137 - 2097290
Alignment:
Q  212 ataacataaaaacaattcattaatgtctcttaaaaatcttattaagaaatatcataactgaaacgctaaggcaatctctacaccatgcaaatacatgtgg 311  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||   ||| |||||||| |||| |||||||||||||| ||||||| || ||    
T  2097137 ataacataaaaacaactcactaatgtctcttaaaaatcttattaagaaataatgtaaatgaaacgccaaggtaatctctacaccattcaaatacctgcgg 2097236  T
Q  312 aaagtaagtgtttcccaatgcaacaccagcaacaactccacctccatacccaat 365  Q
    |||||||||||||||||||||||| |||||||||| |||||| ||||| |||||    
T  2097237 aaagtaagtgtttcccaatgcaactccagcaacaagtccaccgccatatccaat 2097290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 212 - 365
Target Start/End: Original strand, 2124510 - 2124663
Alignment:
Q  212 ataacataaaaacaattcattaatgtctcttaaaaatcttattaagaaatatcataactgaaacgctaaggcaatctctacaccatgcaaatacatgtgg 311  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||   ||| |||||||| |||| |||||||||||||| ||||||| || ||    
T  2124510 ataacataaaaacaactcactaatgtctcttaaaaatcttattaagaaataatgtaaatgaaacgccaaggtaatctctacaccattcaaatacctgcgg 2124609  T
Q  312 aaagtaagtgtttcccaatgcaacaccagcaacaactccacctccatacccaat 365  Q
    |||||||||||||||||||||||  |||||||||| |||||| ||||| |||||    
T  2124610 aaagtaagtgtttcccaatgcaaatccagcaacaagtccaccgccatatccaat 2124663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 110 - 368
Target Start/End: Original strand, 2136929 - 2137183
Alignment:
Q  110 atgcaattacaacaacaaaag-aaactaaagcaaatgagaaccataaatacagaggactaacacatttattgctttcaactaacaagacccttttgagcc 208  Q
    |||||||||||| |||| ||| |||||||| ||||| |||| ||||||||  ||||||||  |  ||||||| |||  ||| |||| |||||||| ||||    
T  2136929 atgcaattacaagaacagaaggaaactaaaacaaattagaaacataaatagggaggactagtatgtttattgttttggactcacaacacccttttaagcc 2137028  T
Q  209 atcataacataaaaacaattcattaatgtctcttaaaaatcttattaagaaatatcataactgaaacgctaaggcaatctctacaccatgcaaatacatg 308  Q
    ||   || |||| ||||| |  ||||||||||||||||||||||||||| || || |||||||||||||||| |  ||||||| ||||||||||||| ||    
T  2137029 at---aaaataataacaact--ttaatgtctcttaaaaatcttattaaggaaaattataactgaaacgctaacgtgatctctataccatgcaaatacctg 2137123  T
Q  309 tggaaagtaagtgtttcccaatgcaacaccagcaacaactccacctccatacccaataag 368  Q
      |||||||| ||||||||||||| || ||||||||||  || |||||||||||||||||    
T  2137124 cagaaagtaactgtttcccaatgccactccagcaacaagacctcctccatacccaataag 2137183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 291 - 365
Target Start/End: Original strand, 2121227 - 2121301
Alignment:
Q  291 acaccatgcaaatacatgtggaaagtaagtgtttcccaatgcaacaccagcaacaactccacctccatacccaat 365  Q
    ||||||||||||||| ||  |||||||||||||||||||||| || |||||||||| |||||| ||||| |||||    
T  2121227 acaccatgcaaatacctgcagaaagtaagtgtttcccaatgccactccagcaacaagtccaccgccatatccaat 2121301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 2120527 - 2120591
Alignment:
Q  234 atgtctcttaaaaatcttattaagaaatatcataactgaaacgctaaggcaatctctacaccatg 298  Q
    |||||||||||||||||||||||| || || ||||||||||||| |||| |||||||| ||||||    
T  2120527 atgtctcttaaaaatcttattaagcaaaattataactgaaacgccaaggtaatctctataccatg 2120591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 108 - 167
Target Start/End: Original strand, 2054199 - 2054259
Alignment:
Q  108 agatgcaattacaacaacaaaag-aaactaaagcaaatgagaaccataaatacagaggact 167  Q
    |||||||||||||| |||||||| |||||||| ||||| ||||||||||||| ||||||||    
T  2054199 agatgcaattacaagaacaaaaggaaactaaaacaaataagaaccataaatagagaggact 2054259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 2054967 - 2055035
Alignment:
Q  101 tcttaccagatgcaattacaacaacaaaagaaa-ctaaagcaaatgagaaccataaatacagaggacta 168  Q
    |||||| | |||||||||||| |||| |||||| || || ||||| ||||||||||||| |||||||||    
T  2054967 tcttacaatatgcaattacaagaacagaagaaaactgaaacaaataagaaccataaatagagaggacta 2055035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 28471189 - 28471120
Alignment:
Q  29 tcacaccaataaacattgatgtgtgtagaacgggtcagtgacaaccaataaccaaaacaattgcaagcaa 98  Q
    |||||||||||||| | |||||||| |  |  ||| ||||||||||||||||||||||||||||||||||    
T  28471189 tcacaccaataaacttagatgtgtgaatcaatggtaagtgacaaccaataaccaaaacaattgcaagcaa 28471120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 98
Target Start/End: Complemental strand, 28462106 - 28462073
Alignment:
Q  65 agtgacaaccaataaccaaaacaattgcaagcaa 98  Q
    |||||||||||||| |||||||||||||||||||    
T  28462106 agtgacaaccaatacccaaaacaattgcaagcaa 28462073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 98
Target Start/End: Original strand, 54744147 - 54744210
Alignment:
Q  35 caataaacattgatgtgtgtagaacgggtcagtgacaaccaataaccaaaacaattgcaagcaa 98  Q
    |||||||| |||||||||| || | |||||| |  |||||||||||||||||||||||||||||    
T  54744147 caataaacgttgatgtgtggagcaagggtcacttgcaaccaataaccaaaacaattgcaagcaa 54744210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 31005419 - 31005357
Alignment:
Q  33 accaataaacattgatgtgtgtagaacgggtcagtgacaaccaataaccaaaacaattgcaag 95  Q
    |||||||||| |||||||||| || |  | ||||||||||||||||||||||| |||||||||    
T  31005419 accaataaactttgatgtgtggagcaaagatcagtgacaaccaataaccaaaataattgcaag 31005357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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